BAC Information

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BAC

Clone NameMSMg01-144B14
Chromosome4 (Build37)
Map Location 62,091,080 - 62,231,668
singlet/doubletdoublet
Overlap geneRnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3
Upstream geneLOC100039150, LOC100039019, LOC100039177, LOC621093, LOC100039206, LOC621127, LOC100039228, LOC384021, LOC100039247, LOC667278, Mup5, LOC435785, LOC667295, LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4
Downstream geneZfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144B14.T7 (MSMg01no144_b14.b1)MSMg01-144B14.TJ (MSMg01no144_b14.g1)
ACCAG348260AG348261
length741734
length of high quality
(start - end)
621 (72 - 692)344 (72 - 415)
definitionCHROMAT_FILE: MSMg01no144_b14.b1 PHD_FILE: MSMg01no144_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:50 2005CHROMAT_FILE: MSMg01no144_b14.g1 PHD_FILE: MSMg01no144_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,231,080 - 62,231,668)(62,091,080 - 62,091,419)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCGGCGGAAT
TCCCAGGAAAGTCCCCGACGTGGATTTTAAAAATTCTGAAGATAATGTTC
CACGTGAGAAGAAGGTTCAGGGTTTAACCATGCAAGGCACCGGCTGAGGG
ACAGGAACAGAAAGACGAGGGGAGGGAGAAGAAAAACCAGGAAACGTGCT
GAAGAGAATGGTCCACATCAAATGCTGTTGAGAGGTCAAGTAGGTTAATA
ACTGAGAAGGGCTCGCTGGATTCGGCAACAAGACAGTCGTTGTTGACCTT
CCGTCCCAGAGTATAATACTGAGCATTAACCAGGTCCACATGAATGAAAA
TGTGCCCAAGTCACTCTAAAAGGAAAAATACCCTGGGCTCAGTGTCAGAG
AATATTCTGAACTCTTTCTTTTCTCTCTCTCTTGTTCTAAATTTAACCAG
ACGGAATGCTTGGCTAAGTGGTGTTTTGCTCACCCTTGAAATGGAGGACC
TGCTTTTTAAGAGTGTGTCTGCACTTCATCTTCAAAGCAGAACACAGTGT
CTTAGGAGTAGTGCTGTCTACAGCTGCAAGTGCTGGGGGCTGTAAATGCA
CGGGAGGAACTTCCATTTGCCTCCAGTGGAGAAGTTTTTGGTGACCTGAA
TACACAAAACAGCATCTAAGGAGAAATTGAGCCACCCCACCCATCCACCC
ACCCACCATAAAAATGATGACATCACATGTGAGCTGAGAGG
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTACAGTTACAAACACAGAAGGCGTCCATT
CAGTCCACCTGCAGGGTATGTCCACCTGCAGGGTATGTGGAAAGAGCTAA
ATAGAAAGTATTCCTGTTCCTCTGAGATTCCTCGTGTCAGTAAAGACCCA
GGAACTGTGTAAGGGAAGATTTCGGGGTAGTTCCAGTTCCTTAGAGAACT
TATGTGATGCTCTGTTCCCTGACCAAATTGATGTCTGAAGCAAAACCTCT
GTCCACTTTTACCCCGGGCCTCCTGTTTTTATCTACATCTTAGTCTCTGC
TCTAAACATGAAGCTCTGAAAATGTTTCATCTTTAAGGAAATGATATTCA
GGGAGAGATGGCCCACCCCACCAAGGAGGGCCCCTAGGATTTGTGCAGAT
GCCCCATGCAATGAGCTGTTTATCTACCCAGTCACTGAGTGCTTACCACT
TGCCATTTGCTGTACCAGGTATTGTACGATTTAGGCCATATAATTGTACT
TCTCTTTTCTTTTATGTCATTCATAGGCTGCTGAGTTTTTTTTATTCTCT
TTTGATTTTCGCCTTTCACTTATTTCCCCTATCTTCTTATCTCATTTTTG
TCCGTTTCTCTCTTTTCTTGTCCTTTACCCCTTTTCTCTCTTCCTCCTCT
TCTTTACTTCTCTCTGTCGTTTCTTCTCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_b14.b1 MSMg01no144_b14.b1 CHROMAT_FILE:
MSMg01no144_b14.b1 PHD_FILE: MSMg01no144_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:50 2005
         (621 letters)



>mm_chr4_62230648_62231668
          Length = 1021

 Score = 1054 bits (545), Expect = 0.0
 Identities = 578/589 (98%)
 Strand = Plus / Minus

                                                                        
Query: 33   gtgagaagaaggttcagggtttaaccatgcaaggcaccggctgagggacaggaacagaaa 92
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 gtgagaagaaggttcagggtctaaccatgcaaggcaccggctgagggacaggaacagaaa 962

                                                                        
Query: 93   gacgaggggagggagaagaaaaaccaggaaacgtgctgaagagaatggtccacatcaaat 152
            |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 961  gacgaggggagggagaagaaaaaccagggaacgtgctgaagagaacggtccacatcaaat 902

                                                                        
Query: 153  gctgttgagaggtcaagtaggttaataactgagaagggctcgctggattcggcaacaaga 212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 901  gctgttgagaggtcaagtaggttaataactgagaagggctcgctggattcggcaacaagg 842

                                                                        
Query: 213  cagtcgttgttgaccttccgtcccagagtataatactgagcattaaccaggtccacatga 272
            ||||||||||||||||||| ||||||||||||||||||||||  |||| |||||||||||
Sbjct: 841  cagtcgttgttgaccttccatcccagagtataatactgagcagcaaccgggtccacatga 782

                                                                        
Query: 273  atgaaaatgtgcccaagtcactctaaaaggaaaaataccctgggctcagtgtcagagaat 332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  atgaaaatgtgcccaagtcactctaaaaggaaaaataccctgggctcagtgtcagagaat 722

                                                                        
Query: 333  attctgaactctttcttttctctctctcttgttctaaatttaaccagacggaatgcttgg 392
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 721  attctgaactctttcttttctccctctcttgttctaaatttaaccagacggaatgcttgg 662

                                                                        
Query: 393  ctaagtggtgttttgctcacccttgaaatggaggacctgctttttaagagtgtgtctgca 452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  ctaagtggtgttttgctcacccttgaaatggaggacctgctttttaagagtgtgtctgca 602

                                                                        
Query: 453  cttcatcttcaaagcagaacacagtgtcttaggagtagtgctgtctacagctgcaagtgc 512
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  cttcatcttcaaagcggaacacagtgtcttaggagtagtgctgtctacagctgcaagtgc 542

                                                                        
Query: 513  tgggggctgtaaatgcacgggaggaacttccatttgcctccagtggagaagtttttggtg 572
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  tgggggctgtaaatgcacgggaggaacttccatttgcctccagtggagaagtttttggtg 482

                                                             
Query: 573  acctgaatacacaaaacagcatctaaggagaaattgagccaccccaccc 621
            |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 481  acctgaatacacaaaacagcatctaaggagaaatcgagccaccccaccc 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no144_b14.g1 MSMg01no144_b14.g1 CHROMAT_FILE:
MSMg01no144_b14.g1 PHD_FILE: MSMg01no144_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:50 2005
         (344 letters)



>mm_chr4_62090880_62091623
          Length = 744

 Score =  611 bits (316), Expect = e-179
 Identities = 334/340 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacagttacaaacacagaaggcgtccattcagtccacctgcagggtatgtccacctgcag 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 tacagttacaaacacagaaggcgtccattcagtctacctgcagggtatgtccacctgcag 260

                                                                       
Query: 61  ggtatgtggaaagagctaaatagaaagtattcctgttcctctgagattcctcgtgtcagt 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ggtatgtggaaagagctaaatagaaagtattcctgttcccctgagattcctcgtgtcagt 320

                                                                       
Query: 121 aaagacccaggaactgtgtaagggaagatttcggggtagttccagttccttagagaactt 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 aaagacccaggaactgtgtaagggaagatttcggggtagctccagttccttagagaactt 380

                                                                       
Query: 181 atgtgatgctctgttccctgaccaaattgatgtctgaagcaaaacctctgtccactttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtgatgctctgttccctgaccaaattgatgtctgaagcaaaacctctgtccactttta 440

                                                                       
Query: 241 ccccgggcctcctgtttttatctacatcttagtctctgctctaaacatgaagctctgaaa 300
           ||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 ccccgggcctcctggctttatctacatcttagtctctgctctaaagatgaagctctgaaa 500

                                                   
Query: 301 atgtttcatctttaaggaaatgatattcagggagagatgg 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtttcatctttaaggaaatgatattcagggagagatgg 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)