Query= MSMg01no144_c05.b1 MSMg01no144_c05.b1 CHROMAT_FILE:
MSMg01no144_c05.b1 PHD_FILE: MSMg01no144_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:53 2005
(502 letters)
>mm_chr4_108294385_108295286
Length = 902
Score = 905 bits (468), Expect = 0.0
Identities = 491/500 (98%), Gaps = 4/500 (0%)
Strand = Plus / Plus
Query: 5 gaattctgtgagtg--tttcggagtgatggttgcaaaacaatgggaatgtataatgttcc 62
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtgagtgggtt--ggagtgatggttgcaaaacaatgggaatgtataatgttcc 262
Query: 63 ttagcttcacacttgaacataggtaggacagcagatttcatgctatgtgtttactacaat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttagcttcacacttgaacataggtaggacagcagatttcatgctatgtgtttactacaat 322
Query: 123 taaatctggggggctggagagatggcttagctgctcttccagaggtcccgaatggtggct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taaatctggggggctggagagatggcttagctgctcttccagaggtcccgaatggtggct 382
Query: 183 tccgaccatttgtaaatacagttccaggggaatccaacaccctcacacagacagacatgt 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tccgaccatttgtaaatacagttccaggggaatccaacaccctcacacagacagacatgc 442
Query: 243 aggcaaaacaccaggcacagaaaataaaaataggtcatttaaaaaagattaaatgtggta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aggcaaaacaccaggcacagaaaataaaaataggtcatttaaaaaagattaaatgtggta 502
Query: 303 catcatcccactactaaggaggcagaagcacgaagattgtgagttcaaggccagcttagg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 catcatcccactactaaggaggcagaagcacgaagattgtgagttcaaggccagcttagg 562
Query: 363 ttatacactgaaaccacgcctcaaattgctcccttctccccacaacagaagatcggctac 422
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttatacactgaaagcacgcctcaaattgctcccttctccccacaacagaagatcggctac 622
Query: 423 atgtacggtagtatctctcaagatgataagaattacctaatgatgaataatgctaagcgc 482
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 623 atgtatggtagtatctctcaagatgataagaattaactaatgatgaataatgctaagcgt 682
Query: 483 tgtgcccagcagctgttgct 502
||||||||||||||||||||
Sbjct: 683 tgtgcccagcagctgttgct 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_c05.g1 MSMg01no144_c05.g1 CHROMAT_FILE:
MSMg01no144_c05.g1 PHD_FILE: MSMg01no144_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:53 2005
(459 letters)
>mm_chr4_108471282_108472141
Length = 860
Score = 557 bits (288), Expect = e-163
Identities = 321/336 (95%), Gaps = 9/336 (2%)
Strand = Plus / Minus
Query: 126 gtttgaggccagccttggatacacgagatcctgtctgaaaacagcaaaaataaacaagaa 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 gtttgaggccagccttggatacacgagatcctgtctgaaaacagcaaaaataaacaagaa 801
Query: 186 ttcatcagtgtgcatgatggtgcatacctttgctcccgatgtacagggggcagaggcagg 245
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 800 ttcatcagtgtgcatgatggtgcatacctttgctcccaatgcacagggggcagaggcagg 741
Query: 246 tgattttctctgagtctgagggcagcctagtgtacagagcgttctaggccagccagggtt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgattttctctgagtctgagggcagcctagtgtacagagcgttctaggccagccagggtt 681
Query: 306 acatagtataacctgctcttaaatagttgaggcttgttaca----cccccccatgtcacc 361
|||||||| |||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 680 acatagtaaaacctgctcttaaatagttgaggcttgttatagtgg----cccatgtcacc 625
Query: 362 atattggcctagtaaccagaatgcaagaggcaggattgcaagctat-aggagcctgggct 420
||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 624 atagtggcctagtaaccagaaggcaagaggcaggattgcaagctataaggagcctgggct 565
Query: 421 aaatggtaagccactctttcaaacgttcccactttc 456
||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaatggtaagccactctttcaaacgttcccactttc 529
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 860
Length adjustment: 10
Effective length of query: 449
Effective length of database: 850
Effective search space: 381650
Effective search space used: 381650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
