Query= MSMg01no144_h11.b1 MSMg01no144_h11.b1 CHROMAT_FILE:
MSMg01no144_h11.b1 PHD_FILE: MSMg01no144_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:18 2005
(682 letters)
>mm_chr4_28318336_28319417
Length = 1082
Score = 1272 bits (658), Expect = 0.0
Identities = 673/678 (99%), Gaps = 1/678 (0%)
Strand = Plus / Plus
Query: 6 gaattcacctccctattcc-aagaactctttttctttcttttttgccagttcagtccctg 64
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacctccctattccaaagaactttttttctttcttttttgccagttcagtccctg 264
Query: 65 aagcaacgtccaaagataagagactcttttatcttgatcctaaaaactccctggatttta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagcaacgtccaaagataagagactcttttatcttgatcctaaaaactccctggatttta 324
Query: 125 ttcagtgtaatgatcctagaattcaaggattttagcttgtcattctttttcttcaggctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcagtgtaatgatcctagaattcaaggattttagcttgtcattctttttcttcaggctg 384
Query: 185 cccattgatgttcagaacagctgccctttttctaagtccataaattcctcatgtaaatca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cccattgatgttcagaacagctgccctttttctaagtccataaattcctcatgtaaatca 444
Query: 245 tactgttctcttatgggaacaactcagttcccaaaatccatccctgcaaaggggcacttg 304
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 tactgttctcttatgggaacaactcagttcccaaaatccatccctgcaatggggcacttg 504
Query: 305 atgccaggtgaccacaggcagtgatttgattagatttttgcactgcttctgaattccagt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgccaggtgaccacaggcagtgatttgattagatttttgcactgcttctgaattccagt 564
Query: 365 cttggcatgtatagaagattttgactagttcctgcaccactatgccaaataaacctgtgg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttggcatgtatagaagattttgactagttcctgcaccactatgccaaataaacctgtgg 624
Query: 425 cagtttctgcattcccttataggtgttagatgctgtctgttccctagtaacttttctccc 484
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 625 cagtttctgcattcccttataggtgttagatgccgtccgttccctagtaacttttctccc 684
Query: 485 agttaggaatcatagagatgagcagctggtgcagtgctaaataataaagggaaaaaaata 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agttaggaatcatagagatgagcagctggtgcagtgctaaataataaagggaaaaaaata 744
Query: 545 aattccagaagtaatgttgagtacctcacagaattagatgtcagaatggagtacctagta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aattccagaagtaatgttgagtacctcacagaattagatgtcagaatggagtacctagta 804
Query: 605 ggaaaatgggcataaaaacaaaagaagatttggagtgtaaattctagccaaggccatgtt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggaaaatgggcataaaaacaaaagaagatttggagtgtaaattctagccaaggccatgtt 864
Query: 665 gaggcaacacttttcctg 682
||||||||||||||||||
Sbjct: 865 gaggcaacacttttcctg 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_h11.g1 MSMg01no144_h11.g1 CHROMAT_FILE:
MSMg01no144_h11.g1 PHD_FILE: MSMg01no144_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:18 2005
(333 letters)
>mm_chr4_28359979_28360711
Length = 733
Score = 636 bits (329), Expect = 0.0
Identities = 332/333 (99%)
Strand = Plus / Minus
Query: 1 agaagaaacagtaccaaaagagaaaaaaattccagcaccaatgagcttaagcagtaatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 agaagaaacagtaccaaaagagaaaaaaattccagcaccaatgagcttaagcagtaatgc 474
Query: 61 caaaggcaaaaagaagacagtagactgactttaatctgtatttaaaacaaacattcatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 caaaggcaaaaagaagacagtagactgactttaatctgtatttaaaacaaacattcatgg 414
Query: 121 ttatacaaataggaagaaaatacactaccaccaagccccatttttaacagatctacttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ttatacaaataggaagaaaatacactaccaccaagccccatttttaacagatctacttat 354
Query: 181 ggcataaatatggtgattatgtaaatattagcatgtaattattctttactaactagtttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ggcataaatatggtgattatgtaaatattagcatgtaattattctttactaactagtttt 294
Query: 241 gttttcactttgtaaaaatgaatccattcaatgtggagagatattgattacattcagatt 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 293 gttttcactttgtaaaaatgaattcattcaatgtggagagatattgattacattcagatt 234
Query: 301 aattattttctcaggaataaatgtttatgaaca 333
|||||||||||||||||||||||||||||||||
Sbjct: 233 aattattttctcaggaataaatgtttatgaaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space: 234576
Effective search space used: 234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
