BAC Information

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BAC

Clone NameMSMg01-145A21
Chromosome4 (Build37)
Map Location 145,213,936 - 145,214,587
singlet/doubletsinglet
Overlap geneOTTMUSG00000010965
Upstream geneGm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701
Downstream geneLOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145A21.T7 (MSMg01no145_a21.b1)MSMg01-145A21.TJ (MSMg01no145_a21.g1)
ACCAG348959AG348960
length723723
length of high quality
(start - end)		671 (43 - 713)635 (72 - 706)
definitionCHROMAT_FILE: MSMg01no145_a21.b1 PHD_FILE: MSMg01no145_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:02 2005CHROMAT_FILE: MSMg01no145_a21.g1 PHD_FILE: MSMg01no145_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:02 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAAT
TCTCACCTGAGTATCCCAAATGGTTGAGAAGCACCTGAAAAAATGTTCAG
CAACCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAATTCAGGTGACAGCAGATGC
TGGCAAGGATGTGGAGACAGTAACACTCCTCCATTGTTGGTGGGATTGTA
CAACCACTCTGGAAATCAGTCTGGCTGTTCCTCTAAAAATTGGACATAAT
GCTACAGGAGGATTCAGCAATACCTCTCCTGGGCATATATCCAGAAGATG
TCCCAATCGGTATGAAGGACACATGCTCCTTATTTATAATAGCCATTAGC
TGGAAAGAACCCAAATGCCCCACAACTGATGAATGGATGCAGAAAATGTG
GTACATTTACACAATGGAATTCTACTCAGCTATTAAAAATAATGAATTTA
TGAAGTTCCTAGGCAAATGGATAGACCTGGAGGGCATCATCCTGAGTGAG
GTAACTCAATCACAAAAGAACTCACATGATATGTACTCACTAATAATTGG
ATATTAGCCCAGAGACTTAGAATACCCAAGATATAAGGTACAATTTGCGA
AACACATGAAGCACGGGAAGAACGAAGACCAAGGTGTGGATACTTTGTCC
CTTCTTGGAATTANGAGCAAGGC

AATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATACAGGAGAGAAACCTTACAAATGCACT
GAATGTGACAAATGCTTTACTTTCAAAGGCAGTCTGAGGATTCATCAGGG
AATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAACCCT
TTACTGAAAAGGGCAAATTGAGAATTCATCAGAGAATTCATACAGGAGAG
AAACCTTATAAATGTAGTGAATGTGACAAATGGTTTATTAAAAAATGCAG
TCTGATAATTCATCAGAGAATTCATACAGGACAGAAACCTTAAAAATGTT
GTGAATGTGACAAATGCTTTACTGAAAAAGGCCATCAGAGAATTCATACA
GGAGAGATACCTTACAAATAGTTTGTATGTGACAAATACAATACAATGTC
AGTCTGAGAAATCATCAGTTTTTCATACAGTAGAGAATATTTATAAATGA
AGTGAACGAGACAATGCTTTACCAAGATATATCATCTTAAAAATCATTAG
AGAATACTTACAGAAGACAAGCTTTTCAATTATATTGAAGGTATGAATCC
TTTACTCTTGGCTTATTTCCTAGAATGTTAACAGTGAATACTTACAGGAT
ACAAACTTAACTCATGCATTGTATGAAGAAATATCTCTGACTTCATTTCA
GGTCAAAGAGAATATCTAATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_a21.g1 MSMg01no145_a21.g1 CHROMAT_FILE:
MSMg01no145_a21.g1 PHD_FILE: MSMg01no145_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:02 2005
         (635 letters)



>mm_chr4_145213753_145214788
          Length = 1036

 Score =  681 bits (352), Expect = 0.0
 Identities = 574/664 (86%), Gaps = 42/664 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacaggagagaaaccttacaaatgcactgaatgtgacaaatgctttactttc---aaag 57
           ||||||||||||||||||||||||| | |||||||||||||||||||||   |   ||| 
Sbjct: 184 atacaggagagaaaccttacaaatgtagtgaatgtgacaaatgctttac---ccgaaaat 240

                                                                       
Query: 58  gc-agtctgaggattcatcagggaattcatacaggagagaaaccttacaaatgcagtgaa 116
            | | ||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 241 tcca-tcttagtattcatcagagaattcatacaggagagaacccttacaaatgcagtgaa 299

                                                                       
Query: 117 tgtgacaaaccctttactgaaaagggca---aat-tgaga-attcatcagagaattcata 171
           |||||||||  ||||||  ||||    |   ||| | | | |||||||||||||||||||
Sbjct: 300 tgtgacaaatgctttacccaaaa----atccaatctta-atattcatcagagaattcata 354

                                                                       
Query: 172 caggagagaaaccttataaatgtagtgaatgtgacaaatggtttattaaaaaatgcagtc 231
           |||||||||||||||||||||| ||||||||||||||||| |||| | ||||| |||| |
Sbjct: 355 caggagagaaaccttataaatgcagtgaatgtgacaaatgctttaatgaaaaaggcagcc 414

                                                                       
Query: 232 tgataattcatcagagaattcatacaggacagaaaccttaaaaatgttgtgaatgtgaca 291
           ||| ||||||||||||||||||||||||| |||| ||||| |||||  ||||||||||||
Sbjct: 415 tgagaattcatcagagaattcatacaggagagaatccttacaaatgcagtgaatgtgaca 474

                                                                       
Query: 292 aatgctttact-gaaaa---------aggc----catcagagaattcatacaggagagat 337
           ||||||||||  |||||         ||      ||||||| ||| ||||||||||||| 
Sbjct: 475 aatgctttacccgaaaattccatcttag--tattcatcagaaaatccatacaggagagaa 532

                                                                       
Query: 338 accttacaaatagtttgtatgtgacaaatacaatac--a--atgtcagtctgagaaatca 393
           ||||||||||||||||  ||||||||||||||||||  |  |||||||||||||||||||
Sbjct: 533 accttacaaatagtttacatgtgacaaatacaatactcatcatgtcagtctgagaaatca 592

                                                                       
Query: 394 tcagttt-ttcatacagtagagaatatttataaatgaagtgaacgagacaatgctttacc 452
           ||||||  ||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 593 tcagttacttcatacagtagagaatctttataaatgaagtgaacgagacaatcctttacc 652

                                                                       
Query: 453 aagatatatcatcttaaaaatcattagagaatacttacagaagacaagcttttcaattat 512
           || ||||||||||||| || ||||||||||||||||| ||||||||| |||||||| |||
Sbjct: 653 aaaatatatcatcttataattcattagagaatacttagagaagacaaacttttcaaatat 712

                                                                       
Query: 513 attgaaggtatgaatcctttactcttggcttatttcctagaatgttaacagtgaata--c 570
           |||| ||||||||||||||| || ||||| ||||||||||||| | |||||||||||  |
Sbjct: 713 attgtaggtatgaatcctttccttttggcctatttcctagaatat-aacagtgaatatac 771

                                                                       
Query: 571 ttacaggatacaaacttaactcatgcattgtatgaagaaatatctctgacttcatttcag 630
           ||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 772 ttacaggctagaaacttaactcatgcattgtatgaagaaatatctttgacttcatttcag 831

               
Query: 631 gtca 634
           ||||
Sbjct: 832 gtca 835



 Score =  257 bits (133), Expect = 2e-72
 Identities = 264/323 (81%), Gaps = 40/323 (12%)
 Strand = Plus / Plus

                                                                       
Query: 70  ttcatcagggaattcatacaggagagaaaccttacaaatgcagtgaatgtgacaaaccct 129
           |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||  ||
Sbjct: 1   ttcatcagagaattcatacaggagagaacccttacaaatgcagtgaatgtgacaaatgct 60

                                                                       
Query: 130 ttactgaaaagggcaa----at-tgaga-attcatcagagaattcatacaggagagaaac 183
           ||||  ||||     |    || | | | |||||||||||||||||||||||||||||||
Sbjct: 61  ttacccaaaa-----atccgatctta-atattcatcagagaattcatacaggagagaaac 114

                                                                       
Query: 184 cttataaatgtagtgaatgtgacaaatggtttattaaaaaatgc-agtctgataat--tc 240
           |||| ||||||||||||||||||||||| ||||   | |||| | | |||  ||||  ||
Sbjct: 115 cttacaaatgtagtgaatgtgacaaatgctttacccacaaatccca-tct--taatagtc 171

                                                                       
Query: 241 atcagagaattcatacaggacagaaaccttaaaaatgttgtgaatgtgacaaatgcttta 300
           |||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||
Sbjct: 172 atcagagaattcatacaggagagaaaccttacaaatgtagtgaatgtgacaaatgcttta 231

                                                                       
Query: 301 ct-gaaaa---------aggc----catcagagaattcatacaggagagatacc-ttaca 345
           |  |||||         ||      ||||||||||||||||||||||||| ||| |||||
Sbjct: 232 cccgaaaattccatcttag--tattcatcagagaattcatacaggagaga-acccttaca 288

                                  
Query: 346 aat--agtttgtatgtgacaaat 366
           |||  |||  | |||||||||||
Sbjct: 289 aatgcagt--gaatgtgacaaat 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 3
Length of query: 635
Length of database: 1036
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1026
Effective search space:   641250
Effective search space used:   641250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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