Query= MSMg01no145_b15.b1 MSMg01no145_b15.b1 CHROMAT_FILE:
MSMg01no145_b15.b1 PHD_FILE: MSMg01no145_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:06 2005
(646 letters)
>mm_chr4_77261439_77262484
Length = 1046
Score = 1131 bits (585), Expect = 0.0
Identities = 627/641 (97%), Gaps = 2/641 (0%)
Strand = Plus / Minus
Query: 7 gaattcagagttttgcctcccatttatgccattttattcagtccagtagctaaaataaaa 66
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 gaattcagagttttggctcccatttatgccattttattcagtccagtagctaaaataaaa 787
Query: 67 catggtcaatgtaaatcttatcacagctacccaatctacataaactgcagtaaattagca 126
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 786 catggtcaatgtaaatcttaacacagctacccaatctacataaactgcagtaaattagca 727
Query: 127 taatgatttttctcataatttataatgaaatgcccactgtgtaaaacttgtg-ttggttg 185
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 726 taatgatttttctcataatttataatgaaatgcccactgtgtaaaacttg-gattggttg 668
Query: 186 gctcttaatttgtgcctcatttccctacagttgcttactaaagtggcagcactgtcaagt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gctcttaatttgtgcctcatttccctacagttgcttactaaagtggcagcactgtcaagt 608
Query: 246 gatatctgcatgtaaatgacagtagttcgcaatggcttcaatacagcaagggtgcttttg 305
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 607 gatatctgcatgcaaatgacagtagttcacaatggcttcaatacagcaagggtgcttttg 548
Query: 306 ctatgcactggttatgctgctgaattagcaggttgtgattggcatttgtatttgggaaag 365
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ctattcactggttatgctgctgaattagcaggttgtgattggcatttgtatttgggaaag 488
Query: 366 aaattacacacaccagatcagcactactcaggttgattgatcatcaaacaggttccaggt 425
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aaattagagacaccagatcagcactactcaggttgattgatcatcaaacaggttccaggt 428
Query: 426 ttggtaaattctgggaggggaaatataactgagactccttgtagttatgccagtctagct 485
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 427 ttggtaaattctgggaggggaaatataagtgagactccttgtagctatgccagtctagct 368
Query: 486 ttccatcccatgtgggccatgatagttttccaggtgtttgccacaaaggcactttactat 545
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 367 ttccatcccatgtgggtcatgatagttctccaggtgtttgccacaaaggcactttactat 308
Query: 546 gtttacctgattttctaatacctgttaccttcttcctaccatccccacctcagtaaatgc 605
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gtatacctgattttctaatacctgttaccttcttcctaccatccccacctcagtaaatgc 248
Query: 606 tctaaaatttcatttatcatgtttacaaactgctcttatac 646
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tctaaaatttcatttatcatgtttacaaactgctcttatac 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_b15.g1 MSMg01no145_b15.g1 CHROMAT_FILE:
MSMg01no145_b15.g1 PHD_FILE: MSMg01no145_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:06 2005
(555 letters)
>mm_chr4_77132203_77133154
Length = 952
Score = 946 bits (489), Expect = 0.0
Identities = 538/555 (96%), Gaps = 3/555 (0%)
Strand = Plus / Plus
Query: 1 actttgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctcccgagtgc 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 201 actttgtagaccaggctggcctcaaactcagaaatccacctgcctctgcctcccaagtgc 260
Query: 61 tgggattaaaggcgtgggccaccacgcctggctattttgccctttcttgcctatggaagt 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaggtgtgggccaccacgcctggctattttgccctttcttgcctatggaagt 320
Query: 121 tgccagtaattgttttctcctttacacaactgctgtacatatttctaatctctgtttctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccagtaattgttttctcctttacacaactgctgtacatatttctaatctctgtttctt 380
Query: 181 tacaccaaattcagggctttgaagttcagttttcttctaattagatctatctaatgaatt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 tacaccaaattcagggctttgaagttcagttttcttctaattagatctatctaacgaatt 440
Query: 241 ccatttggacagtctaaaggggaagttttcctgattatttccctaattatttccttaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatttggacagtctaaaggggaagttttcctgattatttccctaattatttccttaatt 500
Query: 301 gttgattggctaataaagatggcagaagttaatcattggccacaggtatggttgtgggat 360
||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct: 501 gttgattggctaataaagatggcagaagttaatcattggtcaaaggtatggcggtgggat 560
Query: 361 tttctgggcaggacaggaaaagaatgagagtattcgaaatcggatcaagcaagggtagtc 420
||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 561 tttctggacaggacaggaaaagaatgagagtattagaaatcggatcaggcaagggtagtc 620
Query: 421 gagaagttgtagacatgtagatttctctgggcactgatatagtttgtggactctggaaaa 480
||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 621 gagaagttggagacatgtagatttctctgggcactgata--gtttgtggcctctggaaaa 678
Query: 481 tggggcaggatagtctttgcccagtctttgagttatctggtcagttttgaaatataaagg 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 679 tggggcaggatagtctttgcccagtctttgagttatctggtca-ttttgaaatataaagg 737
Query: 541 tacctgttttgcagc 555
|||||| ||||||||
Sbjct: 738 tacctggtttgcagc 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 952
Length adjustment: 10
Effective length of query: 545
Effective length of database: 942
Effective search space: 513390
Effective search space used: 513390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
