Query= MSMg01no145_g13.b1 MSMg01no145_g13.b1 CHROMAT_FILE:
MSMg01no145_g13.b1 PHD_FILE: MSMg01no145_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:29 2005
(553 letters)
>mm_chr4_35634434_35635385
Length = 952
Score = 996 bits (515), Expect = 0.0
Identities = 542/551 (98%), Gaps = 2/551 (0%)
Strand = Plus / Plus
Query: 4 ggaattctgcctcctt-catgaaattgcacttatttcattgtattctgtgtatgtgagaa 62
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctgcctccttacatggaattgcacttatttcattgtattctgtgtatgtgagaa 262
Query: 63 gtctttagatgggcagaattgttgaattttatttaatccaatttccacaaagttctttaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtctttagatgggcagaattgttgaattttatttaatccaatttccacaaagttctttaa 322
Query: 123 aacttgaatctgttggacagttctcttcctcactcttctggactattaatatgccttcaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aacttgaatctgttggacagttctcttcctcactcttctggactattaatatgccttcaa 382
Query: 183 aatacctaactcttttcttcatgtgctttgcacagaatgttccctcagcttggaccaacc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aatacctaactcttttcttcatgtgctttgcacagaatgttccctcagcttggaccaacc 442
Query: 243 ctttccctgatcttttttatatgaccatttctagagagaaaccatggattcaaggcagcc 302
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 443 ctttccctgatcttttttatatgaccatttctagagagaaaccatgtattcaaggcagcc 502
Query: 303 ttccttggcccatcctggctttgtgtcacatgcctgccttgatcctttctcctgtttgat 362
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttccttggcccatcccggctttgtgtcacatgcctgccttgatcctttctcctgtttgat 562
Query: 363 attcacaacaccatcattccacatttgcttgtcccttttctctactggactgaaagagat 422
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 attcacaataccatcattccacatttgcttgtcccttttctctactggactgaaagagat 622
Query: 423 gcagagccaatggatgggtgagccacactgcatccctagctctggaaaagagatgaaaca 482
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 623 gcagagccaatggatggatgagccacactgcatccctagctctggaacagagatgaaaca 682
Query: 483 ataccacgtaccatagtgtgtggctagagtgtgagcgatggacactctttcactgagtga 542
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 683 ataccacgtaccatagtgtgtggctagagtgggagcgatggacactctttcactgagtga 742
Query: 543 aaaggtgcaag 553
|| ||||||||
Sbjct: 743 aa-ggtgcaag 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 952
Length adjustment: 10
Effective length of query: 543
Effective length of database: 942
Effective search space: 511506
Effective search space used: 511506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_g13.g1 MSMg01no145_g13.g1 CHROMAT_FILE:
MSMg01no145_g13.g1 PHD_FILE: MSMg01no145_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:29 2005
(547 letters)
>mm_chr4_35806950_35807896
Length = 947
Score = 1013 bits (524), Expect = 0.0
Identities = 542/548 (98%), Gaps = 2/548 (0%)
Strand = Plus / Minus
Query: 1 tttatcattgtgtatatttgtattagcggtttttgtatgacacaaacagttctgtttaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tttatcattgtgtatatttgtattagcggtttttgtatgacacaaacagttctgtttaaa 688
Query: 61 aaaaaataccccatatattgccatcaaagagaatcttgtttgagctacacatttttattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aaaaaataccccatatattgccatcaaagagaatcttgtttgagctacacatttttattc 628
Query: 121 atagcttcgtttattcgtatgagtcctctaaaattaaagggttcacattacctgttacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 atagcttcgtttattcgtatgagtcctctaaaattaaagggttcacattacctgttacaa 568
Query: 181 aaaagaaaacacgcaggattaaccacattggggaacacactggaggtcacacagctacta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aaaagaaaacacgcaggattaaccacattggggaacacactggaggtcacacagctacta 508
Query: 241 tgaggcagagctcacagtttctgactctgcatataat-caggactccatagaaagatata 299
||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct: 507 tgaggcagagctcacagttgctgactctgcatat-atccaggactccatagaaagatata 449
Query: 300 tgggccttggtatctgaagggttgctacccactcatttgagctcccgaacactcttcttt 359
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 448 tgggccttggtatctgaagggttgctacccactcatttgagcttttgaacactcttcttt 389
Query: 360 tttctttttccttttcatctttctctctctttttaagtttaaattttacatttgtgctta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tttctttttccttttcatctttctctctctttttaagtttaaattttacatttgtgctta 329
Query: 420 aggaaacatcagttgctgcatatcaccatggaagccaaagacactttttatttcattttg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aggaaacatcagttgctgcatatcaccatggaagccaaagacactttttatttcattttg 269
Query: 480 agaatttgccattaaaggtgatggcttccccataactgatgtgatagttacgtttgaagg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agaatttgccattaaaggtgatggcttccccataactgatgtgatagttacgtttgaagg 209
Query: 540 aaacgtga 547
||||||||
Sbjct: 208 aaacgtga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
