Query= MSMg01no145_h21.b1 MSMg01no145_h21.b1 CHROMAT_FILE:
MSMg01no145_h21.b1 PHD_FILE: MSMg01no145_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:35 2005
(419 letters)
>mm_chr4_72454194_72455005
Length = 812
Score = 685 bits (354), Expect = 0.0
Identities = 399/416 (95%), Gaps = 7/416 (1%)
Strand = Plus / Minus
Query: 4 ggaattccagtttctctttcttaaatggaagttttttttttttttcaaagcctggttaat 63
||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct: 612 ggaattccagtttctctttgttgaatggaag--ttttttttttttcaaagcctggttaat 555
Query: 64 atcagatcacatataaaaaactgatattctgtcccccaaatgctcagtaatgatcctgga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 atcagatcacatataaaaaactgatattctgtcccccaaatgctcagtaatgatcctgga 495
Query: 124 ttagaaaaaaaaaaaagaggggcaatttcaattcaatgaatggtaagcaaggaagcatgg 183
|||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 494 ttag---aaaaaaaaggaggggcaatttcaaatcaatgaatggtaagcaaggaagcatgg 438
Query: 184 gacaaatgggtagatcttctctggctagtgtgttgactttgctacccaaactctgcctag 243
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 437 gacagatgggtagatcttctctggctagtgtgctgactttgctacccaaactctgcctag 378
Query: 244 gaatgtgagaatggggtagtgggtcaaggttttggacactctgcaggctatgcaagtgca 303
|||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||
Sbjct: 377 gaatgtgagaatggggtagtaggtcaaggttttg-acactctgcaggct-tgcaagtgca 320
Query: 304 ctggctatgtgatcaagactaggtctgaggttcatcttactagatgttgtgttagagtac 363
|| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 319 ctcgctatgtgaccaagactaggtctgaggttcatctcactagatgttgtgttagagtac 260
Query: 364 agatagtcaacctataattggtctgggaggtggaggtagtatattttggtgtggat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agatagtcaacctataattggtctgggaggtggaggtagtatattttggtgtggat 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 812
Length adjustment: 9
Effective length of query: 410
Effective length of database: 803
Effective search space: 329230
Effective search space used: 329230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_h21.g1 MSMg01no145_h21.g1 CHROMAT_FILE:
MSMg01no145_h21.g1 PHD_FILE: MSMg01no145_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:35 2005
(624 letters)
>mm_chr4_72384420_72385442
Length = 1023
Score = 1108 bits (573), Expect = 0.0
Identities = 612/625 (97%), Gaps = 3/625 (0%)
Strand = Plus / Plus
Query: 1 tatgtttctgagggtggcttaaagcataggtagggtgatcaagaattagactttaatgac 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tatgtttctgagggtggcttaaagcataggtagggtgatcaagaattacactttaatgac 260
Query: 61 attgtcaattagtgatagaagttaagaaaaccccagtcctcaaagaaaggccaggctttc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgtcaattagtgatagaagttaagaaaaccccagtcctcaaagaaaggccaggcttta 320
Query: 121 tgagttcccttctgcttttat-ttcgatttctcacttttgcgctttctgttaagtatgga 179
||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 321 tgagttcccttctgc-tttatagtcgatttttcacttttgcgctttctgttaagtatgga 379
Query: 180 tttcaattgaaaaaaataatgaaatatatcaaaatagcagtaatccttaactgtagattg 239
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttttaattg-aaaaaatactgaaatatatcaaaatagcagtaatccttaactgtagattg 438
Query: 240 tagatatatactccattttgtgtttctaataatgtatttataatattttatgataatcat 299
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 439 tagatatatactccattttgtgattctaataatgtacttataatattttatgataatcat 498
Query: 300 gtgtaattttttcataactatcatttgagttatattattgtgatatccattctattgtga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gtgtaattttttcataactatcatttgagttatattattgtgatatccattctattgtga 558
Query: 360 tatctagatttgtcactcttgaccaactagtacaaagactacctctacttcattgactta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tatctagatttgtcactcttgaccaactagtacaaagactacctctacttcattgactta 618
Query: 420 ccaggaactagttgacaaacttaggttttatgtgtagtgaagtcatgttgtgtttctgtg 479
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ccaggaactagatgacaaacttaggttttatgtgtagtgaagtcatgttgtgtttctgtg 678
Query: 480 tttagccttcagtttccatcatcacaatgaattgtaccttgaaaaattcactgaatccca 539
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 679 tttagccttcagtttccatcatcgcaatgaattgtaccttgaaaaattcactgaatccca 738
Query: 540 gaaagtgcaaaagtgaaagatccactataaagcagtctctttattcatgtaattacaata 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gaaagtgcaaaagtgaaagatccactataaagcagtctctttattcatgtaattacaata 798
Query: 600 ttttctaacatgcttatgtacacac 624
|||||||||||||||||||||||||
Sbjct: 799 ttttctaacatgcttatgtacacac 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1023
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1013
Effective search space: 621982
Effective search space used: 621982
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
