NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCG
GAATTCATGGCTGTATGCTCCTGGGCTGTGTGCCCTTGGGAGACCAGGCA
TCAAAGCCAGGGCTTCTCACAGAACCCAGCACTCACTAGCCATGCTAGCC
AGTTAGTTACTGCCTCAGACTCCCCAGTGTGCTGGGGTTACAGGCTGGAC
CTGATATGCTTCATTATTTTAATTTTTTTCTCACATGGATGCCCGGATGC
ATATTCAGATCTCTGCCCACATGTGGCAGATACTTTGCTGGCAGCTATCT
CCCCAGCCCCACATGAGTTCCAGCCTATGTAGACAGTAGTTGAGGACAGC
AACAAGATCTCTTGGCAGCTTTGAACAGGTACTGAAAGGGGCTTAGGGCC
ATCCGGAGGAACCCTTAGAACCGATGCCAGAGCTTTAAGGCTCTTAATAT
GGAGAGGGAACGAGATGGAAGTCCCCCGTTTTTGTAAGCTAAGATCAAAG
CTTGAGAGAACTCAGGACCTGGATAGAATTTGGCCAAGGAGAGACTCTGT
CACTCTCCACCACTACCAGGACCACATCTTTCCTCAATGTTTAATGAAAA
GAAAACTTAGATTCTGGTCTATTTTTTAATTACTTTATTTCCAGCCAAAT
TAATTTCTCTCCTTTGAGTCCATAGCATCTACTATACTATTTGTCACACA
GAAAATTTTCAGAT

NTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAG
AAACACCTGAAAAAAAAATGTTTTGCATCCTTAATCATCATGGAAATGCA
AATCAAAACTACCCTGAGATTCCACCTCACACCACTCAGAATGGTTAAGA
TAAAAAATTCAGGTGACAGCAGATGCTGGCGAAGATGTGGAGAAAGAGAA
ACACTCCTCCATTGTTGGAGGAATGCAAGCTTGTACAACCACTCTGGAAA
TCAGTCTTGCAGTTTCTCAGAAAATTGGACATAGTACTACCGAAGGATCC
CGCAATACCTCTCCTGGGCATATATGCAGAAGATGTTCCAACTGGTAAGA
AGGACACATGCTCCACTATGCTCATAGCAGCCTTATTTATAATAACCAGA
AGCTGGAAAGACCCCAGATGTCCCTCAACAGAGGAATAGATACAGAAAAT
GTGGTACATTTACACAACGGAGCACTACACAGCTATTAAAAACAATGAAT
TTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGATAACCCAGTCACAAAAGAACTCACATGATATGTACTCACTGATAAT
TGGATATTAGCCCAGAAACTTAGAATACCCAAGATATAAGATACAATTTG
CAAAACACATGA

Query= MSMg01no145_m03.b1 MSMg01no145_m03.b1 CHROMAT_FILE:
MSMg01no145_m03.b1 PHD_FILE: MSMg01no145_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:56 2005
         (668 letters)



>mm_chr4_6382376_6383443
          Length = 1068

 Score = 1205 bits (623), Expect = 0.0
 Identities = 655/667 (98%), Gaps = 4/667 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatggctgtatgctcctgggctgtgtgcccttgggagaccaggcatcaaagccag 64
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 gaattcatagctgtatgctcctgggctgtgtgcccttgggagaccaggcatcaaagccag 839

                                                                       
Query: 65  ggcttctcacagaacccagcactcactagccatgctagccagttagttactgcctcagac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 ggcttctcacagaacccagcactcactagccatgctagccagttagttactgcctcagac 779

                                                                       
Query: 125 tccccagtgtgctggggttacaggctggacctgatatgcttcattattttaa---ttttt 181
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 778 tccccagtgtgttggggttacaggctggacctgatatgcttcattattttaattgttttt 719

                                                                       
Query: 182 ttctcacatggatgcccggatgcatattcagatctctgcccacatgtggcagatactttg 241
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 718 ttctcacatggatgcccggatgcatattcagatccccgcccacatgtggcagatactttg 659

                                                                       
Query: 242 ctggcagctatctccccagccccacatgagttccagcctatgtagacagtagttgaggac 301
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 658 ctggcagctatctccccagccccacacgagttccagcctatgtagacagtagttgaggac 599

                                                                       
Query: 302 agcaacaagatctcttggcagctttgaacaggtactgaaaggggcttagggccatccgga 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 agcaacaagatctcttggcagctttgaacaggtactgaaaggggcttagggccatccgga 539

                                                                       
Query: 362 ggaacccttagaaccgatgccagagctttaaggctcttaatatggagagggaacgagatg 421
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ggaacccttagaaatgatgccagagctttaaggctcttaatatggagagggaacgagatg 479

                                                                       
Query: 422 gaagtcccccgtttttgtaagctaagatcaaagcttgagagaactcaggacctggataga 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaagtcccccgtttttgtaagctaagatcaaagcttgagagaactcaggacctggataga 419

                                                                       
Query: 482 atttggccaaggagagactctgtcactctccaccactaccaggaccacatctttcctcaa 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 atttggccaaggagagactctgtcactctccaccactaccaggaccacatctttcctcaa 359

                                                                       
Query: 542 tgtttaatgaaaagaaaacttagattctggtctattttttaattactttatttccagcca 601
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 358 tgtttaatgaaaagaaaacttagattctggtctattttttaattacttta-ttccagcca 300

                                                                       
Query: 602 aattaatttctctcctttgagtccatagcatctactatactatttgtcacacagaaaatt 661
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 299 aattaatttctctcctttgagtccatagcatctactatactatttgccacacagaaaatt 240

                  
Query: 662 ttcagat 668
           |||||||
Sbjct: 239 ttcagat 233


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)