BAC Information

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BAC

Clone NameMSMg01-145N22
Chromosome4 (Build37)
Map Location 101,257,444 - 101,422,298
singlet/doubletdoublet
Overlap geneDnajc6, Leprot, Lepr
Upstream geneCachd1, LOC100039747, Raver2, Jak1, E130102H24Rik, Ak3l1, LOC669460
Downstream geneB020004J07Rik, LOC665362, C130073F10Rik, LOC384033, LOC381535, LOC332923, LOC100039834, LOC381536, LOC433739, Pde4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145N22.T7 (MSMg01no145_n22.b1)MSMg01-145N22.TJ (MSMg01no145_n22.g1)
ACCAG349558AG349559
length704694
length of high quality
(start - end)		621 (50 - 670)559 (78 - 636)
definitionCHROMAT_FILE: MSMg01no145_n22.b1 PHD_FILE: MSMg01no145_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:05 2005CHROMAT_FILE: MSMg01no145_n22.g1 PHD_FILE: MSMg01no145_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,421,826 - 101,422,298)(101,257,444 - 101,258,002)
sequence
NTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCG
CGGAATTCAAATGTACATATTCACATTTGTATATGTATGTGCATATATAA
GTACTTGATTATTTCAACCAATAAGAAAACATTTTAAATATGTGAAGAAA
CCATTTAAACATCTTACAGGCAAAGATTACTTTAACAAATTATGGTTCAT
ACCATAAAGGTATGAACTCAAGCAGCCATTAAAACTCACACTGCAGTAGA
ATATTGAAAATCTTTAATGTCTGAAGTTCAAGGGACTTATTGCAAATTCA
TACTTGGTTTTGTAAAATGTATTCTGTTTTTATTTCTATGTATATGTGTG
TGCCTGTGCATGGGTATATTCATCAGTTGCCCTAGGAAACCAGAAAGCAA
CGTTGGAGCCTCCAACAGCTACAACCACCTGTGAGCTGCCATGTGGGTGC
AAGGAACCGAACCTGGGTCTTCAGCAAGTGCTTCAAATGGTGAGCCATGT
CTCCAGTCTCCATACTTGTGAAATTAACAAATAGAGTGTATTGAAAAGAA
GAAGTGTGTGTGAATGGCAAACTGTACATCCATTTTCACCTCAGCATGTC
TCTAAATTTGCAAGGTGTATATAAAGAAAAAAATTGATGAGTTCATGACC
ATTACCATCACAATAACACACATTTACTGGGTTCAATGATATTTTCAACC
AAAC

NNNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATTAGGGGCATGATTTCCAATT
AATAGACCTTCGTGTCAAGATTGAGGTCACGTCGTTAATCTTGCTTTTAT
TTTAGGATTTCCACTGTCATGATTTACAGCTAGGCTCAGCCAGCCTTGTC
GGGGTTATTCGAGCATAATTAAACAGGGAAGACAGCCAGATCAGCTTGCT
GGTGAGGAGCAGGGAGAGAGACTGTTGTTTGATTGGTAAAGGGGCTGGCA
GGACGGGGCACACCGGAGGATTCCTTCTTCAGGACCATTTTCTGAGGCAG
TGGCCTCCTGCATCCCAGGCGGTGAGCTCTCTAAGTACTGTCTGGTCCAG
CCAGCACTGCCGCACTCACGTGCACCTCAAGGTACCCTTGGCTGGGTTGT
AAATGTAGCAGACAGTGTGCCTTTTATGTGTGACGGGGTACTGTGAAGTG
CTCCACGGGGAAGACATCTTAGGCATCCTCTTTGCAACAGTCACACAAAA
GCCAAGTACACTTCCCCTCCCCCGCCCGAAAAAGGATGAAGGATGTGGTG
GTTCTGTGATGTACGCCATGCCTTCATTTCTTTCCAATCCTTGTGGTGTT
TTTGGTTTTCCCCTTTGTGTCCATTACCCCTGCCCACCACTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_n22.b1 MSMg01no145_n22.b1 CHROMAT_FILE:
MSMg01no145_n22.b1 PHD_FILE: MSMg01no145_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:05 2005
         (621 letters)



>mm_chr4_101421826_101422846
          Length = 1021

 Score =  861 bits (445), Expect = 0.0
 Identities = 466/473 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcaaatgtacatattcacatttgtatatgtatgtgcatatataagtacttgattat 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gaattcaaatgtacatattaacatttgtatatgtatgtgcatatataagtacttgattat 414

                                                                       
Query: 64  ttcaaccaataagaaaacattttaaatatgtgaagaaaccatttaaacatcttacaggca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ttcaaccaataagaaaacattttaaatatgtgaagaaaccatttaaacatcttacaggca 354

                                                                       
Query: 124 aagattactttaacaaattatggttcataccataaaggtatgaactcaagcagccattaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aagattactttaacaaattatggttcataccataaaggtatgaactcaagcagccattaa 294

                                                                       
Query: 184 aactcacactgcagtagaatattgaaaatctttaatgtctgaagttcaagggacttattg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aactcacactgcagtagaatattgaaaatctttaatgtctgaagttcaagggacttattg 234

                                                                       
Query: 244 caaattcatacttggttttgtaaaatgtattctgtttttatttctatgtatatgtgtgtg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 233 caaattcatacttggttttgtaaaatgtattctgtttttatttctatgtatgtgtgtgta 174

                                                                       
Query: 304 cctgtgcatgggtatattcatcagttgccctaggaaaccagaaagcaacgttggagcctc 363
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 cctgtgcatgggtatgttcatcagttgccctaggaaaccagaaagcaacgttggagcctc 114

                                                                       
Query: 364 caacagctacaaccacctgtgagctgccatgtgggtgcaaggaaccgaacctgggtcttc 423
           |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 caacagctacaagcagttgtgagctgccatgtgggtgcaaggaaccgaacctgggtcttc 54

                                                                
Query: 424 agcaagtgcttcaaatggtgagccatgtctccagtctccatacttgtgaaatt 476
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  agcaagtgcttcaaatggtgagccatgtctccagtctccatacttgtgaaatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no145_n22.g1 MSMg01no145_n22.g1 CHROMAT_FILE:
MSMg01no145_n22.g1 PHD_FILE: MSMg01no145_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:05 2005
         (559 letters)



>mm_chr4_101257244_101258202
          Length = 959

 Score = 1019 bits (527), Expect = 0.0
 Identities = 551/559 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattaggggcatgatttccaattaatagaccttcgtgtcaagattgaggtcacgtcgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattaggggcatgatttccaattaatagaccttcgtgtcaagattgaggtcacgtcgtta 260

                                                                       
Query: 61  atcttgcttttattttaggatttccactgtcatgatttacagctaggctcagccagcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcttgcttttattttaggatttccactgtcatgatttacagctaggctcagccagcctt 320

                                                                       
Query: 121 gtcggggttattcgagcataattaaacagggaagacagccagatcagcttgctggtgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcggggttattcgagcataattaaacagggaagacagccagatcagcttgctggtgagg 380

                                                                       
Query: 181 agcagggagagagactgttgtttgattggtaaaggggctggcaggacggggcacaccgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcagggagagagactgttgtttgattggtaaaggggctggcaggacggggcacaccgga 440

                                                                       
Query: 241 ggattccttcttcaggaccattttctgaggcagtggcctcctgcatcccaggcggtgagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggattccttcttcaggaccattttctgaggcagtggcctcctgcatcccaggcggtgagc 500

                                                                       
Query: 301 tctctaagtactgtctggtccagccagcactgccgcactcacgtgcacctcaaggtaccc 360
           |||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||
Sbjct: 501 tctctaagtactgtctggtccagccagcactgccacactcacgtgcagttcaaggtaccc 560

                                                                       
Query: 361 ttggctgggttgtaaatgtagcagacagtgtgccttttatgtgtgacggggtactgtgaa 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| 
Sbjct: 561 ttggctgggttgtaaatgtcgcagacagtgtgccttttatgtgtgacggggtactgtgag 620

                                                                       
Query: 421 gtgctccacggggaagacatcttaggcatcctctttgcaacagtcacacaaaagccaagt 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 gtgctccacggggaagacatcttaggcttcctctttgcaacagtcacacaaaagccaagt 680

                                                                       
Query: 481 acacttcccctcccccgcccgaaaaaggatgaaggatgtggtggttctgtgatgtacgcc 540
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 681 acacttcccctcccccgcccgaaaaaggatgaaggatgtggcggttctgtgatgtacacc 740

                              
Query: 541 atgccttcatttctttcca 559
           |||||||||||||||||||
Sbjct: 741 atgccttcatttctttcca 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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