Query= MSMg01no146_d17.b1 MSMg01no146_d17.b1 CHROMAT_FILE:
MSMg01no146_d17.b1 PHD_FILE: MSMg01no146_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:45 2005
(737 letters)
>mm_chr4_52112446_52113576
Length = 1131
Score = 1297 bits (671), Expect = 0.0
Identities = 719/737 (97%), Gaps = 6/737 (0%)
Strand = Plus / Plus
Query: 1 catgtcttctttggactatatcttaccctgctatcagaacatcccccataatgcagcggc 60
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct: 201 catgtcttctttggactataccttacactgctatcagaacatcctttataatgcagcggc 260
Query: 61 cagatttttattctttgatgcaatactttagtgtctctctctcatcttcctctgtccttc 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 cagatttttattctttgatgcaatactttagtgtttctctctcatcttcctctgtccttc 320
Query: 121 taatgtctgctttattcctatctcagtttctaggacccaaaacaattttttttcttcatc 180
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 321 taatgtctgctttattcctatttcagtttctaggacccaaaacaattttttt-cttcat- 378
Query: 181 ttcatcattcattgttctacacttctctcaatgcacaaattataagtattcctcttccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttcatcattcattgttctacacttctctcaatgcacaaattataagtattcctcttccca 438
Query: 241 aaatattctttggcttctgcctatccatcttcccactctgacctagaatctccttataat 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 439 aaatattctttggcttctgcctatccatcttcccactctgacctagaatctccttatagt 498
Query: 301 ccattggtaactttcctctatgattctaaagaatctcacattcttcaaacactcttgcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ccattggtaactttcctctatgattctaaagaatctcacattcttcaaacactcttgcaa 558
Query: 361 ttgtctacatgaattattttctttgacaatggaaagcaaattttgttgtatgtcagagga 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttgtctacatgaattattttcttcgacaatggaaagcaaattttgttgtatgtcagagga 618
Query: 421 aatgctattcactgttttatccatgtctctgtttagttctgacttgcaaaaagtgcctat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aatgctattcactgttttatccatgtctctgtttagttctgacttgcaaaaagtgcctat 678
Query: 481 tccaggagcatggaactgtgcttagatgtcacaaattttgtttgattgaatagaatttct 540
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 679 tccaggagcatggaactgtgcttagatgtcacaaattttgtttga----atagaatttct 734
Query: 541 aaatcgacttctttaactaaattcagaaatgtaaaaaatacagtactcagtgggaaacaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aaatcgacttctttaactaaattcagaaatgtaaaaaatacagtactcagtgggaaacaa 794
Query: 601 ttagacactttcctctgttagtatcatgctttaatattagtttaaaaactaacaatggtg 660
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 795 ttagacactttcctctgttagtatcatgctttaatattagtttaaaaactaataatggtg 854
Query: 661 cagatacctatactaaggccaaaagtaacagacaaaatatcaaataaatctttaaattga 720
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 855 cagatacctatactaaggccaaaagtaatagccaaaatatcaaataaatctttaaattga 914
Query: 721 aaaagaaacacatggca 737
|||||||||||||||||
Sbjct: 915 aaaagaaacacatggca 931
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 737
Length of database: 1131
Length adjustment: 10
Effective length of query: 727
Effective length of database: 1121
Effective search space: 814967
Effective search space used: 814967
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no146_d17.g1 MSMg01no146_d17.g1 CHROMAT_FILE:
MSMg01no146_d17.g1 PHD_FILE: MSMg01no146_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:45 2005
(700 letters)
>mm_chr4_52212415_52213514
Length = 1100
Score = 1263 bits (653), Expect = 0.0
Identities = 689/701 (98%), Gaps = 2/701 (0%)
Strand = Plus / Minus
Query: 1 ttttcaaggaaaataatcatgtctggtaaaaatggacagagttttatgattttctgtctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 ttttcaaggaaaataatcatgtctggtaaaaatggacagagttttatgattttctgtctt 1002
Query: 61 ttgtaagaaataattttaagttatataacaagtcaaattaaaacaattttgtactttttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 ttgtaagaaataattttaagttatataacaagtcaaattaaaacaattttgtactttttc 942
Query: 121 ccctgtgacacattttttttaatcaaaaaaattttaattaactaaatacatacctcaaga 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 941 ccctgtgacacattttttttaatcaaaaaatttttaattaactaaatacatacctcaaga 882
Query: 181 cttttctatgggcccttaccaaaacaatccattcagggaatttcctacaatgctggggac 240
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 881 cttttctatgggcccttaccaaaacaatccactcagggaatttcctacagtgctggggac 822
Query: 241 taacaggatatgaagggcagacgtacatttgccaacaggtttaatcacacgtttatcaga 300
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 821 taacaggatatgaagggcagacgtacacatgccaacaggtttaatcacacgtttatcaga 762
Query: 301 aactcaattcaagtcaaatcaactcaaaaaatattcaagtcaaattcatgtcaaaagagc 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 761 aactcaattcaagtcaaatcaactcaaaaaatattcaagtcaaattcacgtcaaaagagc 702
Query: 361 attctaagtcttaggaaatgaaaataacatcattttggtcactttgttatgtaaaagttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 attctaagtcttaggaaatgaaaataacatcattttggtcactttgttatgtaaaagttc 642
Query: 421 tgaagcaaattaaacttcttttggatgcaaccattaaatttgaaaggcagctttgggaca 480
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 641 tgaagcaaattaaacttcttttgcatgcaaccattaaatttgaaaggcaactttgggaca 582
Query: 481 tgaatattttataatgtcacatctgaaatttaatttcttctttcagagagaataaaggca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tgaatattttataatgtcacatctgaaatttaatttcttctttcagagagaataaaggca 522
Query: 541 t-ccaggtatgacacattcatcaccacagagtgtcagatgggccatcagagtcagaggat 599
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tccca-gtatgacacattcatcaccacagagtgtcagatgggccatcagagtcagaggat 463
Query: 600 gtccaggtccccaagtgaaaaaggtaccttgagctcagtgtttagctgcagctttgatgc 659
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gtccaggcccccaagtgaaaaaggtaccttgagctcagtgtttagctgcagctttgatgc 403
Query: 660 tagcagaggttcctagcccagaaaacaaagctatccttcct 700
|||||||||||||||||| ||||||||||||||||||||||
Sbjct: 402 tagcagaggttcctagccaagaaaacaaagctatccttcct 362
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space: 752100
Effective search space used: 752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
