BAC Information

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BAC

Clone NameMSMg01-146F08
Chromosome4 (Build37)
Map Location 27,269,706 - 27,270,032
singlet/doubletsinglet
Overlap genenone
Upstream geneManea, Bhmt-ps1, LOC665079, Gng2-ps1
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146F08.T7 (MSMg01no146_f08.b1)MSMg01-146F08.TJ (MSMg01no146_f08.g1)
ACCAG349898AG349899
length1,1981,246
length of high quality
(start - end)		552 (91 - 642)542 (86 - 627)
definitionCHROMAT_FILE: MSMg01no146_f08.b1 PHD_FILE: MSMg01no146_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:59 2005CHROMAT_FILE: MSMg01no146_f08.g1 PHD_FILE: MSMg01no146_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATCCTATNNNNNAACACTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCTCAAAAAGGGAAACTCCCTTTAATGACTAACAAAGAACT
GATAAACAACTGAGTAACCCTAGAAATGTAAATAACCCCCAATTTGATGT
TTTCTATCCTATCCCTTCAGAGTATCTAATATCAATAATACAAGTGACAT
ACCATGCTGCCAGGGATGTATACTCATCCCTGGGGAATACTCATCAATTG
CTGGTGAGAATTTAAACTTGTACAGTCAGTATAGAAATCAATTGGAAGTT
TCTTGAGGAAGATGAAAATGTATCTATGTCAATTCAGACTATACCACTCT
TGCCACTATAACAAGTGGACACTTCATCCTACCATGGTGATACTTGCTCA
ACCATGTTTAGTGTTGCTATATTCATAATATCAAGAAATTGGAAACAACC
TAGATTTTCCTCAAGAGAAAATTGAGTTAAGAACATGGGGTACATTATAC
TTAGCCATTAAAATGAGTGAAATAATGGAAGTTGGGTAAATGTATGGGAC
TAGAAATAATCCTGAATGAGGTAATCAGACCAAGAAAGACAAATATGATA
GATAGGGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGATTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTN
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TNTTTCTTTCTTATTCTTTTTTCTTTTTTTTTTCTTCTTCTTTTTTTTTT
ATCCCTTCTTCTATTTTAATCTTCCTTTTCTCTCTCTTTTTTTTTCCCCT
TTCTTTTATTCTTATCTAATCTTTTCTTCTTCTTTTTATTTTCTTTCCCT
TTTTCTCTTTCTTTTTCTTTATTATTCTTTTTTTCTTCTCTTTTTCTCTT
TCCTTATCTCTATCTTCTCTCTCCTTTTCCTTTATTTTTTCATTTTATTT
TTTTTTTTCATCTATTCTATTCCTCTTCTTTTTTTTTACCTTTTTTTT

TATATCTTTNNAAAGATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTAATCCTAGTCACTCCCATTCTC
GGGGTGTAATAGTGCCTTGATGGGCAAGCACCCAATCAGGAGCTGTCACG
CCATATCAGGTGCTGAAACGTCACGCTGCGGGTTATAAAAGCAGTGCCAT
TTTCCTGGTTCGGGATCTTCCTGAGAAGCAAGCAATAAAGCTTTTGCCGC
GGAAGATTCTGGTTTGTTGCGTCTTTCTTGCCGGTCGAGCGGGACGCAAT
ATTGTGTCTCTGAACTGAAATTTTCAGGTAATTTTTGCATTTTAAGGTAG
CGACCCTTTCATTTATTATCAGTCTTTCCCTTCTAATATCTACCTGAATT
CATGTGTAGAATTATTTATATGTGAGAAATGTTTATCAAAGGTACTGAAG
AGAAGACACATTTCATAAAGAAACAGAAAGGAATTTACTCTGTGCTGTGG
AAGCCAAAGGTCATATTGCAAAATTAAGGTACACAGGGTCATTATGAAAT
GAATAGAATGAAGAGTGTAATATTAATATTATTTAACATTTATCAATTAT
AAATCATATCCTGCAATATTTTTGTTAGATTAATCTATACAGAGTGACGT
AGTTTATTTCTATGCTTATACATAGAGCAATTTCAAATTGATATAGCTTA
AAGGACTGTATCATAGTCAAATATGATAAATCAAAAAGTACCATAGTTTC
AATAACAAACCATATTAATATTTATAATTGTCTACTTCATTCTTATGGCT
ATGGAAATAGTGTGTCTATTTTTCTACTTGAACATTTAATTTAAAATTAT
ATATTTATTAGTGAGTTAAAGATCAGAATGGTGACAATTCATAATTTTAA
ACCCACTGCTTATTGAATTATATTCTGGGCTTGTGTGGTCCCCCCTTTTT
ATTCTCATCGTCTCGTGAAGTAATAGTCAGTAATAATTCCTAATTTTTAT
TCTTACCTTGTTTCATCAATGGTTATTTCCTGATAATCTCTTGCCTTTAC
TCTATAAAACCTTTCCTCTTTTAAATATCCATCTTCGGTCATATTAATAA
TTGTCCCCACTAACTTCTTTAATTACTTCTTCTCATATTTCTCCCTCTTC
CATATATCACCTTGCTAATCAATGTTTTTTATACCTTTCTCTTCNCTCAT
TCTCTTATCGCTCTGTTCATTTTTCTTACTTATCTTCTCTCCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_f08.g1 MSMg01no146_f08.g1 CHROMAT_FILE:
MSMg01no146_f08.g1 PHD_FILE: MSMg01no146_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:59 2005
         (542 letters)



>mm_chr4_27269345_27270292
          Length = 948

 Score =  522 bits (270), Expect = e-152
 Identities = 311/328 (94%), Gaps = 8/328 (2%)
 Strand = Plus / Minus

                                                                       
Query: 217 ttgtgtctctgaactgaaattttcaggtaatttttgcattttaaggtagcgaccctttca 276
           |||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 688 ttgtatctctgaactgaaattttcaggtaatttgtgcattttaaggtagtgaccctttca 629

                                                                       
Query: 277 tttattatcagtctttcccttctaatatc------tacctgaattcatgtgtagaattat 330
           |||||||||| ||||||||||||||||||      |||||||||||||||||||||||||
Sbjct: 628 tttattatcattctttcccttctaatatctacatgtacctgaattcatgtgtagaattat 569

                                                                       
Query: 331 ttatatgtgagaaatgtttatcaaaggtactgaagagaagacacatttcataaagaaaca 390
           |||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 568 ttatacatgagaaatgtttatcaaaggtactgaagagaaggcacatttcataaagaaaca 509

                                                                       
Query: 391 gaaaggaatttactctgtgctgtggaagccaaaggtcatattgcaaaattaaggtacaca 450
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 508 gaaaggaatttactctgtgctgtggaagccaaagggcatattgcaaaattaaggtacaca 449

                                                                       
Query: 451 gggtcattatgaaatgaatagaatgaagagtgtaatattaatattatttaacatttatca 510
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gggtcattatgaaatgaacagaatgaagagtgtaatattaatattatttaacatttatca 389

                                       
Query: 511 attataaatcata-tcctgcaatatttt 537
           ||||||||||||| || |||||||||||
Sbjct: 388 attataaatcatactc-tgcaatatttt 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 948
Length adjustment: 10
Effective length of query: 532
Effective length of database: 938
Effective search space:   499016
Effective search space used:   499016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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