BAC Information

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BAC

Clone NameMSMg01-146G04
Chromosome4 (Build37)
Map Location 34,836,167 - 34,836,844
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292
Downstream geneCga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146G04.T7 (MSMg01no146_g04.b1)MSMg01-146G04.TJ (MSMg01no146_g04.g1)
ACCAG349938AG349939
length1,2141,215
length of high quality
(start - end)
683 (86 - 768)695 (88 - 782)
definitionCHROMAT_FILE: MSMg01no146_g04.b1 PHD_FILE: MSMg01no146_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:06 2005CHROMAT_FILE: MSMg01no146_g04.g1 PHD_FILE: MSMg01no146_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCTCTTTTTNNAACAATGGGCGCTAAGACTCACTAAGGGAGAGGATCC
GCGGAATTCCGGATGGCTTAGTTACCTTTAAAGACTTTTCATGANCCTGC
AAGCTGGTAACAAACCCTGAAAGTTAAGCCAGAGACCCGCTCCTAGTGCA
TAGGCACGTAGGCATTCTCTGTTATAACCTCTTATTCAATTTATGACTGA
ATTTATGTGCAGACCTGCAGTGAGTCGTCCCCCCCCCCCCATGTGAACAC
AGTTTCTAAGAGTCACACAAGTACTGAGAACAAAGGGCGGACATAAATCC
CTCTCCACTTAGAGGAGGGCAATTTCCTGTGGAGGCTTTACCTAGCCTTC
CACTGAGTCACTTTGAGATGCTAACTGGAGGCTGCAGGAGCCGACCCCCC
GCATTGTGACTTGGTCAGGCGGATCAGCTGCAAGAAGAACTGTAGAAGCA
GGGTACCTTTTACCTAGGCTAGAGAGCAAATATGGTCTCTCTACAGTCTA
AACTGTTTATAATGAGAACAAGGACGACAGGCTACTGTCAAATACAAACT
GGATTGCATTCATTTCAATGGATACATATTGACTACTAAGTACACTGTCA
CTTGCCAAGTGACATTCATAGAAAGCAGACTGGACATAACACAGTTTCTA
CTATTAAAGTGCTACCAGATTGTGAATAAGACTCAACTATATGGCACCTG
ACTGTATGCAACACAGTAAGTGGTTCATCAAAGCTACCCCACTTTGAAGA
GTGGGGATCAGAGAAGTATACAGAGAAAGAGAACATTTTGTATAGGTGTG
CTGTGGTTGTAATTCTAGCCCTCCAGAAGCAGAGGCAGGTCGATTACTGC
AATTTTGAAGCTAGCATGGTCTACATGGATAGCTTCCAGACAACTAACAC
CATGTAGTAAGACTCTATTACAAGAAGCAGGGTAAACTACAAAAAGAACT
ATTGAGGGCTGTAGAGACAGTTCATCAGGTAATAGCCCGGGCTCCCTCTC
CAGGTTAAAATCCCAGTAACCCCTTTGTGTTCCCAAATACTTGTAAACCC
CCGATTTGATGCCCTCTTCTAACACCGTCGGCTTTTTTTTTTTCTTTTTA
TACCAACTTTCTTGTTGGTTTAATACTCTCTTATGTGTAATAAATAACAT
TTAAAAATCTCCAAATTAAACTCTTTGTTGTTTAAAATTCTCTTTCCCTT
TTTGTTCTTTATAT
CCCTTCCTTNTNTTAAGATGTGAGCCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAGCTCTACCTGCCTCAGC
CTTCCAAACACTGGCTCTGTGCCACCATGCTGGGCCCCTGATGGTGTTTT
TGGTACCTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGAAGC
AAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTCCATACT
GCTGTTCATCACCAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGGAG
CAGGAGCTGATGCAAACGCCATGGAGGGATGTTACTTACTGGCTTGCTTC
CCCTGGCTTGCTCAGCCTGCTTTCTTATAGAACCCAAGATTACCAGCCCA
GAGATGTTCCCACCCACAAGGGGCCTTTCCCCTTGATCACTAATTGAGAA
AATGCCTTTCAGCTGGATCTCATGGAGGCATTTCCTCAACTGAAGCTCCT
TTCTCTGTGATAACTCCAGCTGTGTCAAGTTGACACAAAACTAGCAAGTA
CAGTACCTAAAAATGTTTGTTGCAGGGTTGGAGATATGGCTCAGAGGTTA
AGGGAACTGACTGGTATTCTAGAGGACTGGGTTTGAATCCCAACACCCAC
ATGGAGGTTTACAGCTGTCTATAACTCCAGTTCCTGAGAGTCAACTCCTT
CTGGCCTCTGCATATACCAGGCATGCCAGTGGCCTGTAGACATACATTCA
GGCAAAACACCCATACATGTAAAATAAAATAATAATTTTTCAAGCTTTCA
ATATTTGTTGGGTAAGTGTAATGTACTTTTTTTATTGGATATTTTCTTTA
TTTACATTTTCAATGCTATCCCCTTTCCTGCTTTCCCCCCTGAAAATCTC
TTATTCATCTTTTCTAATTTCTTATCTCCCTATTTTACTTGTTGGTAATC
CTTTTATACTTTTTTTTTTTTTTTTTCTTTTTTTTTTCTCTTCTCTTTTT
TTTCTCCTTCTTATTTACACTTCTTTCTATTTTTTTCTATTCTTTTTTAT
TTTTCTCTACATTAATTTTTATTTTTTTTTCCTCTTTCTTTATTTTTATT
TTTTTTCTTCATATTTTACTTCTTTTCTCTTTTTCTCTTCTCTCCCTTAT
ATTTTTTCTTATATTTATATATATATACTTTCTTTTTTTTATTATTTCCA
CCTCATTTATTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_g04.b1 MSMg01no146_g04.b1 CHROMAT_FILE:
MSMg01no146_g04.b1 PHD_FILE: MSMg01no146_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:06 2005
         (683 letters)



>mm_chr4_34835763_34836844
          Length = 1082

 Score = 1143 bits (591), Expect = 0.0
 Identities = 655/679 (96%), Gaps = 7/679 (1%)
 Strand = Plus / Minus

                                                                        
Query: 11   cctgcaagctggtaacaaaccctgaaagttaagccagagacccgctcctagtgcataggc 70
            ||||||||||||||||||||  ||||||||||||||||||   |||||||||||||||||
Sbjct: 1082 cctgcaagctggtaacaaacggtgaaagttaagccagagaattgctcctagtgcataggc 1023

                                                                        
Query: 71   acgtaggcattctctgttataacctcttattcaatttatgactgaatttatgtgcagacc 130
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 acgtaggcattctctgttataacctcttattcaatttatgactgaatttatgtgcagacc 963

                                                                        
Query: 131  tgcagtga--gtcgtcccccccccccc----atgtgaacacagtttctaagagtcacaca 184
            ||||||||  |||||||||||||||||    ||||||||||||||||| |||||||||||
Sbjct: 962  tgcagtgagtgtcgtcccccccccccccccaatgtgaacacagtttctgagagtcacaca 903

                                                                        
Query: 185  agtactgagaacaaagggcggacataaatccctctccacttagaggagggcaatttcctg 244
            |||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 902  agtactaagaacaaagggccgacataagtccctctccacttagaggagggcaatttcctg 843

                                                                        
Query: 245  tggaggctttacctagccttccactgagtcactttgagatgctaactggaggctgcagga 304
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842  tggcggctttacctagccttccactgagtcactttgagatgctaactggaggctgcagga 783

                                                                        
Query: 305  gccgaccccccgcattgtgacttggtcaggcggatcagctgcaagaagaactgtagaagc 364
            ||||||||||||||  | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 782  gccgaccccccgcaaagcgacttggtcaggcggatcagctgcaagaagaactgcagaagc 723

                                                                        
Query: 365  agggtaccttttacctaggctagagagcaaatatggtctctctacagtctaaactgttta 424
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722  agggtaccgtttacctaggctagagagcaaatatggtctctctacagtctaaactgttta 663

                                                                        
Query: 425  taatgagaacaaggacgacaggctactgtcaaatacaaactggattgcattcatttcaat 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662  taatgagaacaaggacgacaggctactgtcaaatacaaactggattgcattcatttcaat 603

                                                                        
Query: 485  ggatacatattgactactaagtacactgtcacttgccaagtgacattcatagaaagcaga 544
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 602  ggatacatattgactactaagtacactgtcacttgccaagtgacatt-atagaaagtaga 544

                                                                        
Query: 545  ctggacataacacagtttctactattaaagtgctaccagattgtgaataagactcaacta 604
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543  ctggacataatacagtttctactattaaagtgctaccagattgtgaataagactcaacta 484

                                                                        
Query: 605  tatggcacctgactgtatgcaacacagtaagtggttcatcaaagctaccccactttgaag 664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483  tatggcacctgactgtatgcaacacagtaagtggttcatcaaagctaccccactttgaag 424

                               
Query: 665  agtggggatcagagaagta 683
            |||||||||||||||||||
Sbjct: 423  agtggggatcagagaagta 405


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1082
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1072
Effective search space:   721456
Effective search space used:   721456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)