BAC Information

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BAC

Clone NameMSMg01-146G13
Chromosome4 (Build37)
Map Location 49,721,931 - 49,722,566
singlet/doubletsinglet
Overlap genenone
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2
Downstream geneLOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146G13.T7 (MSMg01no146_g13.b1)MSMg01-146G13.TJ (MSMg01no146_g13.g1)
ACCAG349955AG349956
length1,2631,284
length of high quality
(start - end)
679 (84 - 762)318 (83 - 400)
definitionCHROMAT_FILE: MSMg01no146_g13.b1 PHD_FILE: MSMg01no146_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:09 2005CHROMAT_FILE: MSMg01no146_g13.g1 PHD_FILE: MSMg01no146_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATTTTCTTTNTTACATTTGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCTCACAGTATGAAGCCTTTAATAGAAGCCATCTATGAACC
AGAAAAGAGATCTTCCCCATACAATAAATCTGCCCCCCCTTGAACTTCCA
AGAATAAAGACTACGAGAAATAAGTGTCTTTTGTTCCTTATAAGCTAACC
TGTCCTTGAAATTTGTTTCAGTAGCCCAAACAAGCCAAGATCATTGCTAA
ATATTCCACCCAATCTCAGCTTTCCGCTCTTGTTTCGCTTTTAAAATAAA
AGTATGGCCTATGAGAGAAAGGGTACCTTTACCTCCTTGCGCTTGAAGTT
CTTTCAATGATTTTTTTTCACTTTACATCCCAATCACAGCCCCCTCCCTC
CTCGTTTCTAAATCCCACCCTCAAATGTTCCTCTCCCGTTACACCCTCCT
ATTCTCCACAGAAACAGGGAAGCCCATCCATAGGTAACAACCTGCCCTGG
CACATCAAGTCGAAGCAGGACTAAGCACATCCTCTCCCACTGAGGCCAGA
CAAGGCAGTACAGGTAGGAGAAGGGGATCCAAAGGCAGGCAACAGAATCT
GAGACAGCCCCCTCTCCCACAGACTCTGAATTATTAAGAAAAGAAAAGTG
AGATGTTTGTGAAGTTGGGAGAAAGATGTGATGTGTTGTGTAAGCCCAAG
GATCTTGGAAAGAGGAAGTGGGGGTATGTTATCAAGATATATTGTATAAT
ATATAAAATATCCAAAGAATAAATGACAATATGATTTTTAAAAATATATT
GTCAGGTCAAGGGGTATACTGAAAGTGTCTGGTCAAATTAAATACCATGC
ATCAGAGGCACAAAGACTTATTATGTTTTTGAGAATAAAAAGGAACGTGT
TAAGATAATTGAACACTTGCCCTCAAATTTTGCTTTGTAAGTAGCAGAAT
ATAAAGGTTCAAGCAGATAAAAATCAGTAATGTACCTGCCCAAATATGAT
CTGTTGATCTTTCATTAAAAGCCTTTGATTCTTTCCTAATTGGTCTCTTT
AAGGGTTTTTTTTAAAATATATTTAGTGTCTGGTTTTAATTCTTAACTTC
CGTATCTTGTTCCCTTTATATAAAATAAAATGTCTTGCTACTTCTTTTTC
ACTATTTATATTCTTTTTCCTCTTCCTTTCCCTGTCTTTATGATATAATA
TATAATTATTTCTTATATTATTCGCTTCCTCCATGTATTTATTAATTAAT
CTTACTTCCTTCT
CGCTCTTTTTTTTAGCATGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCCTTAAAGGCTTTTCAGGGATTATATA
AAGGCTAGGGCCCCCCTTGAGGACATATTGCCCCCGGGTTGGTTGATGGT
TGCTGTTGGTCACAGGTTGTCTTCTATTCCTGGACAAAACATCACGACCA
AGAAGCAGTTGGGGAGGAAAGGGTTTATTCAGTTTATACTTCCATACTGC
TGTTCATCACCAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAAAAAGCA
GGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCTTCCC
CTGGCTTGCTCAGCCTGCTCTCATAGAAACAAGACTACCAGCCAAGAGAT
GTTTTTTTCCACAAGGGGACCTCCCCACTTGATCACTAACTGAGAAAATG
CCTTACAGCTGGATCTCGTGGAGACATTTCCCCAACTGAAGCTCCTTTCT
CTGTGATAACTCCAGCCTGTGTCAAGTTGACACAAAACTAGCCAGTACAT
AGGGTGTGTTAAGTATCTGTGCACAAAGAATAAAGAAGGAATTAGATATC
CTGAAGGCCAAGACCACATTGTTCCCTTTCCTTTCTATCCTTTTATTTCC
CTCCTTTCTAGCGTTATAGGGTTGAAAGGCGTATAACTTTGCATCTCTTC
TATCCTTTCTTTATCCTTTTCATTTTTTTTTTCTTTTTCTTTACATTCCT
TTATATATTTTTATTGTATCCTTCTTTTTTTCTTTTTTTTCTTTTCTTAT
ACTTTTTCCTCTTCATTCTCTCTTATTTCATGTTTCTTCTATCTTTTTTA
TATTTTATTTTCTTCACTATTATTTTTTTTTTTTCTATATCTCTTCTCTA
ACTTAATTTTATTTTTTCAACTTATCTTTATTCATTTCATATTCTTCCTC
CTTTTATTTTTTTTCTTTCTTTTCTTCTCCCTTATTTTTTTTTTTCTCTA
TTTATTTTTTTTCTCTTTTTTATCTTCTTTTTCTCCCCTTCTCATCTCTT
TTCACTATCTCTTATTTTCTTTTCATTCCTATTTTTTCTTTCTCTATTAT
TCTCTATCTAACTCTTCCTTACTTTTCATTCCTCTTCTCTCCTCTATCTT
CCATACTCACTTATATATATTTTATCATTTCTAACTTTTTATCTTTTTAT
TCTTCTCATATTTTACTTTTATTGTCTTAATTTCTAATTCACTTACTTAT
CTTTTCATATCTCTTCTTCCCCATCTCCCCCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_g13.b1 MSMg01no146_g13.b1 CHROMAT_FILE:
MSMg01no146_g13.b1 PHD_FILE: MSMg01no146_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:09 2005
         (679 letters)



>mm_chr4_49721931_49723009
          Length = 1079

 Score = 1127 bits (583), Expect = 0.0
 Identities = 623/639 (97%), Gaps = 6/639 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagccatctatgaaccagaaaagagatcttccccat---acaataaatctgccccccct 57
           |||||||||||||||||||||||||||||||   |||   |||||||||||||||   ||
Sbjct: 636 gaagccatctatgaaccagaaaagagatctt---cataagacaataaatctgcccattct 580

                                                                       
Query: 58  tgaacttccaagaataaagactacgagaaataagtgtcttttgttccttataagctaacc 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tgaacttccaagaataaagactacgagaaataagtgtcttttgttccttataagctaacc 520

                                                                       
Query: 118 tgtccttgaaatttgtttcagtagcccaaacaagccaagatcattgctaaatattccacc 177
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 519 tgtccttgaaatttgtttcagtagcccaaactagccaagatcattgctaaatattccacc 460

                                                                       
Query: 178 caatctcagctttccgctcttgtttcgcttttaaaataaaagtatggcctatgagagaaa 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 caatctcagctttccgctcttgtttcgcttttaaaataaaagtatggcctatgagagaaa 400

                                                                       
Query: 238 gggtacctttacctccttgcgcttgaagttctttcaatgattttttttcactttacatcc 297
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gggtgcctttacctccttgcgcttgaagttctttcaatgattttttttcactttacatcc 340

                                                                       
Query: 298 caatcacagccccctccctcctcgtttctaaatcccaccctcaaatgttcctctcccgtt 357
           |||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 339 caatcacagcccgctccctcctcgcctctaaatcccaccctcaaatgttcctctcccgtt 280

                                                                       
Query: 358 acaccctcctattctccacagaaacagggaagcccatccataggtaacaacctgccctgg 417
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 279 acaccctcctattctccacagaaacagggaagcccatccatgggtaacaacctgccctgg 220

                                                                       
Query: 418 cacatcaagtcgaagcaggactaagcacatcctctcccactgaggccagacaaggcagta 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 cacatcaagtcgaagcaggactaagcacatcctctcccactgaggccagacaaggcagta 160

                                                                       
Query: 478 caggtaggagaaggggatccaaaggcaggcaacagaatctgagacagccccctctcccac 537
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 159 caggtaggagaaggggatccaaaggcaggcaacagagtctgagacagccccctctcccac 100

                                                                       
Query: 538 agactctgaattattaagaaaagaaaagtgagatgtttgtgaagttgggagaaagatgtg 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  agactctgaattattaagaaaagaaaagtgagatgtttgtgaagttgggagaaagatgtg 40

                                                  
Query: 598 atgtgttgtgtaagcccaaggatcttggaaagaggaagt 636
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  atgtgttgtgtaagcccaaggatcttggaaagaggaagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)