Query= MSMg01no146_j01.b1 MSMg01no146_j01.b1 CHROMAT_FILE:
MSMg01no146_j01.b1 PHD_FILE: MSMg01no146_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:29 2005
(678 letters)
>mm_chr4_53568108_53569179
Length = 1072
Score = 1151 bits (595), Expect = 0.0
Identities = 637/655 (97%), Gaps = 8/655 (1%)
Strand = Plus / Minus
Query: 1 tggatctctctccgcttgaggccagccctacaaagtgagttctaggacagccagggcagt 60
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 tggatctctctgagtttgaggccagccctacaaagtgagttctaggacagccagggcagt 839
Query: 61 tagttatacaaagaaac--tgtctcaggggaaggagatgaagaagacgtattagtccctg 118
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 838 aagttatacaaagaaactttgtctcgggggaaggagatgaagaagacgtattagtccctg 779
Query: 119 tttgggagtactggagatcatgcttagggcctcgtgcatgctcaggacatgtctgtctcc 178
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 778 tttgggagtactggagatcatgcctagggcctcgtgcatgctcaggacatgtctgtctcc 719
Query: 179 agtatttttactcggccttttcactgtctgaattatatacatttctttgtcatattctaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 agtatttttactcggccttttcactgtctgaattatatacatttctttgtcatattctaa 659
Query: 239 actcacaagagaacagggtttaccaggccggcttttaaatccagtcatttctctagttct 298
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 658 actcacaagagaacagggtttaccaggccggcttttaaatccagccatttctctagttct 599
Query: 299 cggcattacactgtttacaaaaggtccctattacaaataaagctacattcagttgtattc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cggcattacactgtttacaaaaggtccctattacaaataaagctacattcagttgtattc 539
Query: 359 agaactgttttcaggggtagttctgacatcaacacgattattaaataaaaaggcttttct 418
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 538 agaactgttttcaggggtagttctgacattaacacgattattaaataaaaaggcttttct 479
Query: 419 gtaaaagtccaaggacaaatttaatgttagttgagataactattatggttagatcgggca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 478 gtaaaagtccaaggacaaatttaatgttagttgagataactattatggttagatcggaca 419
Query: 479 ggcatggatatcaactccagccttgccacattccagttctcaaaatgtgtctagtagatt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ggcatggatatcaactccagccttgccacattccagttctcaaaatgtgtctagtagatt 359
Query: 539 acctctctacactttagtttcctctgctatggaatataaaacactaacagtaataggtca 598
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 358 acctctctacactttagtttcctctgctatggaatataaaacac------taataggtca 305
Query: 599 cctgccaggggatgtgacacctctctctctctctctctctctctctctctctctc 653
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cctgccagaggatgtgacacctctctctctctctctctctctctctctctctctc 250
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 94
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1072
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1062
Effective search space: 709416
Effective search space used: 709416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_j01.g1 MSMg01no146_j01.g1 CHROMAT_FILE:
MSMg01no146_j01.g1 PHD_FILE: MSMg01no146_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:29 2005
(773 letters)
>mm_chr4_53410241_53411413
Length = 1173
Score = 1342 bits (694), Expect = 0.0
Identities = 754/774 (97%), Gaps = 2/774 (0%)
Strand = Plus / Plus
Query: 1 ttccacaatcccacaatcctctaaaacgctgccaccatcttcagacccataaagacattc 60
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 201 ttccacaatcccacaatcctctaaaatgctgccaccatcttcagacctataaagacattc 260
Query: 61 aaaccacaatactggcagagacacagccctacttaagggaggctggagtcctcagcagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaccacaatactggcagagacacagccctacttaagggaggctggagtcctcagcagtc 320
Query: 121 aagtgtcaagtgctgtgatgtcttctgtcaccctgtacctcagaaataggctcaatcacc 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtgtcaagtgccgtgatgtcttctgtcaccctgtacctcagaaataggctcaatcacc 380
Query: 181 acatgcttattaaacatacatactaagccagaaagtccagggttcccttaagtcttactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatgcttattaaacatacatactaagccagaaagtccagggttcccttaagtcttactt 440
Query: 241 ctaaaacttcccctgatgacttggcttttgtccttaagaagcaaactggctgggattttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaaaacttcccctgatgacttggcttttgtccttaagaagcaaactggctgggattttc 500
Query: 301 tcacccaaagaactggtattaggccacaccccagatggcagttctgactgccaatgtggc 360
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 tcacccaaagaactggcattaggccacaccccagatggcagttctaactgccaatgtggc 560
Query: 361 tttcccctctcagacatatattctaaaacatgaaaggggggattaaaaacaaagacatcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcccctctcagacatatattctaaaacatgaaaggggggattaaaaacaaagacatcc 620
Query: 421 aaactgatagctactttaaagcagagctggggttgcggttgtggcttagttgggagagtg 480
|||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||
Sbjct: 621 aaactgatagctactttaaagcagagctggggttacggttgtggcctagctgggagagtg 680
Query: 481 cttgctagcatgcaggagggtctcatttcctccctgggctaacactggctgtattagtcc 540
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 cttgctagcatgcaggagggtctcatttcctccctgggctaacactggccatattagtcc 740
Query: 541 atgactataatcctggcattgggaggcagaggcaggaggctgagctcaaggttaccttgg 600
|| ||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 741 ataactgtaatcctggcactgggaggcagacgcaggaggctgagctcaaggttaccttgg 800
Query: 601 gaagtacaacacacgaggcaagcctgggataagtgagaccttgtctcagaagggaaaata 660
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtagtacaacacacgaggcaagcctgggataagtgagaccttgtctcagaagggaaaata 860
Query: 661 cgtttcaaaaggaaaacaggacagagctccagctttgagagccagagaaatctgctgagc 720
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 cttttcaaaaggaaaacaggacagagctccagctttgagagccagagaaatctgctgagc 920
Query: 721 ctggttgagataccta-tcaaggcaggtccagaggaagaggggccaaaaactgt 773
||||||||||| || | |||||||||||||||||||||||||||| ||||||||
Sbjct: 921 ctggttgagatccc-agtcaaggcaggtccagaggaagaggggccgaaaactgt 973
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 773
Length of database: 1173
Length adjustment: 10
Effective length of query: 763
Effective length of database: 1163
Effective search space: 887369
Effective search space used: 887369
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
