Query= MSMg01no146_j06.b1 MSMg01no146_j06.b1 CHROMAT_FILE:
MSMg01no146_j06.b1 PHD_FILE: MSMg01no146_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:31 2005
(648 letters)
>mm_chr4_77506964_77508011
Length = 1048
Score = 1214 bits (628), Expect = 0.0
Identities = 643/648 (99%)
Strand = Plus / Plus
Query: 1 ggtttgcttcctgtttctctgggagatcctgtttttaagagtcagtaaattatgtaaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtttgcttcctgtttctctgggagatcctgtttttaagagtcagtaaattatgtaaact 260
Query: 61 gctatcaacctaacatttcactgggagcagaagtatttcactatttaaaattctagtaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctatcaacctaacatttcactgggagcagaagtatttcactatttaaaattctagtaca 320
Query: 121 tgcttaagagaactgaggaaatacggcgtctcatgtgaatcctctgaagtctctcttgct 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tgcttaagagaactgaggaaatacggtgtctcatgtgaatcctctgaagtctctcttgct 380
Query: 181 tagcttctaataagcgtcattctcacgtggagcattcagtgaaaatgtttctgtcgctcc 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 tagcttctaataagcgtcattctcacgtggagcattcagtggaaatgtttctgtcgctcc 440
Query: 241 tctgtttcaattcagtagaaatgattagtgcctgatgtcactgtcaaacacattcaggaa 300
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgtttcaattcagtagaaatgaaaagtgcctgatgtcactgtcaaacacattcaggaa 500
Query: 301 ggtttgatgagcaagcccgaaggaaacactgtcttttcctagaattgctatgataattgg 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtttgatgagcaagcccgaagggaacactgtcttttcctagaattgctatgataattgg 560
Query: 361 cacaatctgtgtgcagatgttttcttttaatttttcaattctgatgttcagagacggact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacaatctgtgtgcagatgttttcttttaatttttcaattctgatgttcagagacggact 620
Query: 421 tctctgcctcagtcagtgtactcaccatggagtagtaccatacaaggggtagctgacata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctctgcctcagtcagtgtactcaccatggagtagtaccatacaaggggtagctgacata 680
Query: 481 tgcgaaagctaaaaaatgtccttctggataaaacatcggtatgaccaggcccttctttgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgcgaaagctaaaaaatgtccttctggataaaacatcggtatgaccaggcccttctttgg 740
Query: 541 ttcatcactttactgagtcttgatgatttaatatcaccactctacagaacatattaaatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttcatcactttactgagtcttgatgatttaatatcaccactctacagaacatattaaatt 800
Query: 601 ttaaatatttattgaataaataaaacaatgctattgcaaaaacaggtc 648
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttaaatatttattgaataaataaaacaatgctattgcaaaaacaggtc 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_j06.g1 MSMg01no146_j06.g1 CHROMAT_FILE:
MSMg01no146_j06.g1 PHD_FILE: MSMg01no146_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:31 2005
(569 letters)
>mm_chr4_77689417_77690385
Length = 969
Score = 485 bits (251), Expect = e-141
Identities = 310/345 (89%), Gaps = 31/345 (8%)
Strand = Plus / Minus
Query: 13 attactcttatttgaaagggcctagaacacctttcacagtgtaagtcatatgcaatagta 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 attactcttatttgaaagggcctagaacacctttcacagtgtaagtcatatgcaatagta 267
Query: 73 agccctttcaaccctttgctttctttgtgtttgttgcagcagatccctgattcg------ 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agccctttcaaccctttgctttctttgtgtttgttgcagcagatccctgattcgtttttt 207
Query: 127 ------gttttttttttaagttttatttaaactttttattttattttttgtttcttcttc 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ttttttgtttgttttttaagttttatttaaactttttattttattttttgtttcttcttc 147
Query: 181 ttttttatatttttctttttctttctttctttctttctttctttctttctttctttcttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ttttttatatttttctttttctttctttctttctttctttctttctttctttctttcttt 87
Query: 241 ctttctttctttctttctttctttctttctttctttcttcttcttcttcttttacccttc 300
||||||||| ||| ||| ||||| || | | ||||||| ||| ||||
Sbjct: 86 ctttctttc-----ttc-ttc-ttctt--ttac---c--cttcttcccctt-----cttc 46
Query: 301 ttccccttcttcttccccttctttcccttcttcttccccttcttt 345
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 ttccccttcttcttccccttctttcccttcttcttccccttcttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 122
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
