Query= MSMg01no146_m20.b1 MSMg01no146_m20.b1 CHROMAT_FILE:
MSMg01no146_m20.b1 PHD_FILE: MSMg01no146_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:00 2005
(726 letters)
>mm_chr4_12992390_12993516
Length = 1127
Score = 1251 bits (647), Expect = 0.0
Identities = 698/715 (97%), Gaps = 2/715 (0%)
Strand = Plus / Minus
Query: 14 gaattctttctcaggggtaccccttt-agctatatctaacgatcttaggcctttaaacac 72
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 822 gaattctttctcaggggtacccttttcagctatatctaacgatcttaggcctttaaacac 763
Query: 73 cccctattggatctcttgccgcgtctgtcctttggttgcttttctgtttctttatcattt 132
|| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ccaagattggatctcttgctgtgtctgtcctttggttgcttttctgtttctttatcattt 703
Query: 133 tactttcagaggacctgacctgataccattgcataggtatttgttgggtaagttgaggaa 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tactttcagaggacctgacctgataccattgcataggtatttgttgggtaagttgaggaa 643
Query: 193 ggtggagtctgtaccacgttttgggactgaacattcaatctctccttgacaagcttctaa 252
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 642 ggtggagtctgtaccacgttttgagactgaacattcaatctctccttgacaagcttctaa 583
Query: 253 gttgtttctttgcatattcctacttgtcctagagttgaagagctgaatattgataatgta 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gttgtttctttgcatattcctacttgtcctagagttgaagagctgaatattgataatgta 523
Query: 313 ttagacgtttcacttaaaaaatatgctacagttacctggagcccattgttttaataaaat 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ttagacgtttcacttaaaaaatatgctacagttacctggagcccattgttttaataaaat 463
Query: 373 gctataacctcgtgtcttaaatcaatatgctttcaaatttagaatatgtttgcgggttcc 432
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 462 gctataacctcatgtcttaaatcaatatgctttcaaatttagaatatgtttgtgggttcc 403
Query: 433 caaaatacactctctggatttgcatttcagcgcagagtacatgaacttttaattaactgg 492
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 caaaatacactctctagatttgcatttcagcgcagagtacatgaacttttaattaactgg 343
Query: 493 ggagggggactctgaatggatcatcattctttgtcttcgacttggatgacaagtacggac 552
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 342 ggagggggactctgaatggatcatcattctttgtcttcgacttggatgacaagtactgac 283
Query: 553 attttgacttcaatattttcttgttctctcgtgcttatattatccctattatgtttgatt 612
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 282 attttgacttcaatattttcttgttctcttgtgcttatattatcactattatgtttgatt 223
Query: 613 tataaatac-tttttttttctgagtcagggtttctctgtgtaacagccctggctgtcctg 671
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tataaatacttttttttttctgagtcagggtttctctgtgtaacagccctggctgtcctg 163
Query: 672 gaactcacagaggtctacatgcctctgcttccccagtactagaagtaaaggcaaa 726
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 162 gaactcacagaggtctacatgcctctgcttcccaagtgctagaagtaaaggcaaa 108
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 726
Length of database: 1127
Length adjustment: 10
Effective length of query: 716
Effective length of database: 1117
Effective search space: 799772
Effective search space used: 799772
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no146_m20.g1 MSMg01no146_m20.g1 CHROMAT_FILE:
MSMg01no146_m20.g1 PHD_FILE: MSMg01no146_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:00 2005
(642 letters)
>mm_chr4_12809152_12810193
Length = 1042
Score = 1181 bits (611), Expect = 0.0
Identities = 635/643 (98%), Gaps = 1/643 (0%)
Strand = Plus / Plus
Query: 1 tgcttctaatccttgttcagtgaatgagacctagtgtctgtcattttctgagcaagtact 60
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 201 tgcttctaatccttgttcagtgaatgagagggagcgtctgtcattttctgagcaagtact 260
Query: 61 ctttggtcaagaaaaaggcattgatctcaaaatgcttctatttttctaagcagcaggtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttggtcaagaaaaaggcattgatctcaaaatgcttctatttttctaagcagcaggtat 320
Query: 121 aaaaaatgaatttaatagtaaataaattatcttctgaacaaacccaagtaaaaataccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaaatgaatttaatagtaaataaattatcttctgaacaaacccaagtaaaaataccaa 380
Query: 181 ataatagtcaatgtataatattgcttatgaaataaaaacaaggctcgagtctctaggaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataatagtcaatgtataatattgcttatgaaataaaaacaaggctcgagtctctaggaat 440
Query: 241 atccatcacgatgctctatcaatatggaatgaaacaataattacttgcttctccaactta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atccatcacgatgctctatcaatatggaatgaaacaataattacttgcttctccaactta 500
Query: 301 atttagacgaagttaaaaggtatgcactcaaatcaattgtttagttttccttttgtttgt 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttagactaagttaaaaggtatgcactcaaatcaattgtttagttttccttttgtttgt 560
Query: 361 tgtaaccaatgggtttagcattaacatactcacaattttgactggacataacatacatat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtaaccaatgggtttagcattaacatactcacaattttgactggacataacatacatat 620
Query: 421 gcgaagatcccagggcctggaccaccaaccaaagaatacacatggaacaacccatggtgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcgaagatcccagggcctggaccaccaaccaaagaatacacatggaacaacccatggtgc 680
Query: 481 tggccacatatgttgcagaggatggctttgttggacatcagtaggaggacaggcccttgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggccacatatgttgcagaggatggctttgttggacatcagtaggaggacaggcccttgg 740
Query: 541 ggcatgagggtgtttgatgacccagtgtaggggaatgccaaagcaggaggacaggagtgg 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 ggcatgagggtgtttgatgacccagtgtaagggaatgccaaagcaggaggacaggagtgg 800
Query: 601 gtgagtgggggatcctcctcatagaagcaggggg-tgggggat 642
||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 801 gtgagtgggggatccccctcatagaagcaggggggtgggggat 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
