BAC Information

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BAC

Clone NameMSMg01-146P12
Chromosome4 (Build37)
Map Location 36,795,616 - 36,796,289
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146P12.T7 (MSMg01no146_p12.b1)MSMg01-146P12.TJ (MSMg01no146_p12.g1)
ACCAG350366AG350367
length1,2031,178
length of high quality
(start - end)
675 (91 - 765)707 (136 - 842)
definitionCHROMAT_FILE: MSMg01no146_p12.b1 PHD_FILE: MSMg01no146_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:23 2005CHROMAT_FILE: MSMg01no146_p12.g1 PHD_FILE: MSMg01no146_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATCTCTNNNNNTACAGTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTCAGTTCTGACCTTTTAATTTTATGGGGTTATTT
GATTTTCTGAAGTCCACCTTCTTGAGTTCTTCCCATATGTTGGATATTAG
TCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTG
GTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGT
TTCATTAGGTCCCATTTGTCAATTCTTGATCTTACAGCACAAGTGAAAAA
GACTTACAAGCATTTTATCCTTGTTCAAATTATTTTTCCCTCTCTTACAG
TATTGAAACTTAGTGTGCAGAATGTTGAACATTTTACCATCTATAAGTCC
ATATTTGCTTGTAGACTAGTTTTCAAGTACTTAAAACGTTAGATTCCTAC
ACTGACATGTGTAAAACATTAGTCCCTAAAGGATAATTTTAAATTAATAA
AAGTAATACTAAGGGGAAATCCTGAAATGTGATGTTAAAAGAAACTGTCT
GAGTTTCAGGATTTTCCAGAGTGTAAAGGGGACCCCACACATATTTTGTC
ACATACAAAGCTAAATAATGAATCTTGAAATAAAAATAATATCATTTGAT
CCCACAAAGCAAACTTTANAAGATCTGCATTTTCGAGTAAATTAAACTCA
TAATATCACAAATAAATAAGATTTCATAATTAAGAGTCAGATTTTGGTAT
GATATCTCATATCTATAATTTCAGACCTGGGAATAATGAGATAGTAAGGT
TCCTGCCCAGCCTGGGCTGTGTAGAAAGACTTTCTTTAAAAATAAAGTTA
TACATGTATTAAAATGACCAATAGGTGTAGCTTTGCCCATTACCGTTTTA
AGATAAAATTTTAGAGGAATCTTTTATCCTTGTGGGCAATCATTTTATAT
AATATCATTTAAGAGTTTACTTAATTTGACCTTACAAAAACTGTTTTGGA
GTTTTCTATATGGATCCCTCATGTCCTAAAAAAGAAGTTTCTCTTTTTTA
ACCATAACCCTTTATTGGGAACCACTTTTTTCCCGATTAATTTTATGGAT
TATCTGGTGACCCCTCTTTTCTTAACCTTCTGTTCTTTCCCCTCTCTCGT
CTGATTTATTATCTTTCATTTTCCCCATTCTTTTCGTATCAATCTTCTTT
ATA
ATATCTTTNTTNATACCATGTGAGGCTGGGGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTAATAGGCCAAGAAACAATT
TTCTGAACAGAACATCACCCTCTAAGATCAACCCCTGATCATTGGGACCT
CATGAAATGTAAAAGCTTCCATAAGGCAAAGGACACACGCTGTCATAGCA
AAATCAGCTACATACAGATTGAGAAAATATCTTCACTAACCTTACACCCA
ATGGAGGGTTAATGTCCAAAATAAATAAAGAATGCAAGAAGTTAGACTCC
ATCAAACAAATAACACAATTTAAAAGGGGGTACAGAGCTAAACAGAGAAT
TCTCAACAGAGGGATAAACAATGGCTCAGAAGCACTTAAAGAAATATTCA
ACATCCTTAGTCATAAGGGAAATGCAAACCAAAACAACCCTGAGATTCCA
CCTTTCACCAGTCAGCATGGCTAAAATCAAAACTCAAGTGACAGCACATG
TTGGCAAGGATGCGGAGAAAGAGGAACACTCCTCAACTGGTGGTACTGCA
AACTTGTACAACCACACTGGAAATGGAAATCAATCTGGTAGTTTCTCACG
AAATTGGAAATAGTCCTACCTGAAGACCCAGCTATACCATTCCTGGGCAT
ATAACCAAGAGGCTCAACCATACCACAAGGACATATGCTCCACTGTGTTT
ATAGAAACTTTTTTCACAATAGTCACAGACTGGGCAAAAGCCATGTGTCC
CTCAAATGAAGAGTTGATACATAAAATGTGTTCATTTATAAATTAGGATA
CTATTCAGCTATTAAAAACAAGACCATCATGAATTTTACAGGCAAATGGA
TAGAACTAGAAAATATCATCCTGGCCTGGTGAGATGGCTCAATGGGTAAA
GAGCACCCGACTGCTCTTCTGAAGGTCCAGAATTCCAATCCCACAACCAC
ATGGTGGCTCACAACATCCGTAACAGACCTGACTCCCTCTTCCGGGGTGT
CTGAAAAAAGTTACCGTGGACTTTCCTTTTATAAATAACTAATTCTTTTA
AAAAAAAAAAAGAATTTATCCTCCCGAAGGAGGGAAACCCCAACCCCCCA
AAATATGGCGGAAAGGTACCTCCCCGCAAAAGGGGGACCTTACTCCCTAA
AATAATCAAAAACCCCGGTTTATATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_p12.b1 MSMg01no146_p12.b1 CHROMAT_FILE:
MSMg01no146_p12.b1 PHD_FILE: MSMg01no146_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:23 2005
         (675 letters)



>mm_chr4_36795416_36796489
          Length = 1074

 Score = 1214 bits (628), Expect = 0.0
 Identities = 663/675 (98%), Gaps = 1/675 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggggttatttgattttctgaagtccaccttcttgagttcttcccatatgttggatattag 60
           ||||||||||||||||||||||||||||||||||| |||||   ||||||||||||||||
Sbjct: 201 ggggttatttgattttctgaagtccaccttcttgaattctttatatatgttggatattag 260

                                                                       
Query: 61  tcccctatctgatttaggataggtaaagatcctttcccaatctgttggtggtctttttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 tcccctatctgatttaggataggtaaagatcctttcccaatctgttggtggtcttttagt 320

                                                                       
Query: 121 cttattgacggtgtcttttgccttgcagaaactttggagtttcattaggtcccatttgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttattgacggtgtcttttgccttgcagaaactttggagtttcattaggtcccatttgtc 380

                                                                       
Query: 181 aattcttgatcttacagcacaagtgaaaaagacttacaagcattttatccttgttcaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattcttgatcttacagcacaagtgaaaaagacttacaagcattttatccttgttcaaat 440

                                                                       
Query: 241 tatttttccctctcttacagtattgaaacttagtgtgcagaatgttgaacattttaccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttttccctctcttacagtattgaaacttagtgtgcagaatgttgaacattttaccat 500

                                                                       
Query: 301 ctataagtccatatttgcttgtagactagttttcaagtacttaaaacgttagattcctac 360
           |||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 ctataagtccataaatgcttgtagactagttttcaagtacttaaaaggttagattcctac 560

                                                                       
Query: 361 actgacatgtgtaaaacattagtccctaaaggataattttaaattaataaaagtaatact 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 actgacatgtgtaaaacattagtccttaaaggataattttaaattaataaaagtaatact 620

                                                                       
Query: 421 aaggggaaatcctgaaatgtgatgttaaaagaaactgtctgagtttcaggattttccaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaggggaaatcctgaaatgtgatgttaaaagaaactgtctgagtttcaggattttccaga 680

                                                                       
Query: 481 gtgtaaaggggaccccacacatattttgtcacatacaaagctaaataatgaatcttgaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgtaaaggggaccccacacatattttgtcacatacaaagctaaataatgaatcttgaaa 740

                                                                       
Query: 541 taaaaataatatcatttgatcccacaaagcaaactttanaagatctgcattttcgagtaa 600
           |||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||
Sbjct: 741 taaaaataatatcatttgatcccacaaa-caaactttaaaagatctgcatttttgagtaa 799

                                                                       
Query: 601 attaaactcataatatcacaaataaataagatttcataattaagagtcagattttggtat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 attaaactcataatatcacaaataaataagatttcataattaagagtcagattttggtat 859

                          
Query: 661 gatatctcatatcta 675
           |||||||||||||||
Sbjct: 860 gatatctcatatcta 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1074
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1064
Effective search space:   707560
Effective search space used:   707560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)