BAC Information

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BAC

Clone NameMSMg01-146P20
Chromosome4 (Build37)
Map Location 8,957,855 - 8,958,358
singlet/doubletsinglet
Overlap genenone
Upstream geneCar8, LOC100039494, LOC100039505, LOC100039478, Rab2, EG666752, LOC666760, Chd7, LOC666782
Downstream geneLOC100039584, 4933402J24Rik, Asph, Gdf6, 4930448K20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146P20.T7 (MSMg01no146_p20.b1)MSMg01-146P20.TJ (MSMg01no146_p20.g1)
ACCAG350382AG350383
length1,2191,229
length of high quality
(start - end)
617 (140 - 756)506 (120 - 625)
definitionCHROMAT_FILE: MSMg01no146_p20.b1 PHD_FILE: MSMg01no146_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:26 2005CHROMAT_FILE: MSMg01no146_p20.g1 PHD_FILE: MSMg01no146_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGATACTTNNNNNNATCACTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCAACTGAGGAATACCCCTTAAAGGACAAGNACCTGAAA
AAATGTTCAACATCCTTCTTTATCAGGGACATGCAACCCCAAACAACCTT
GAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGGA
CAGCAGATGTTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGATTGCAAGCTGGTACAACCACTCTGGAAATCAGTCTGGCGGTTC
CTCAGAAAATTGGACATAGCACTACCGGAGGATCCCGCAATACCTCTCCT
GGGCATATATCCAGAAGATATCCCAACCGGTAAGAAGGACACATGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGTACCC
AGATGTCCCTAGATAGAGGAATGGATACAGAAAATGTGGTACATTTACAC
AATGGAGTACTACTCGGCTATTAAAAGCAACCTGTAGTTTTTAACCATGC
CCCCTGAAACCTGTAATGTACTTCTCTCTTAGTCAGTGTTCTTTTGTTCT
GAAGAAAGCATGACATCTCTTATAAAGGAAAGCATTTAATAGGGGCTGAC
TTATTGTTCAGGGGTTTCGTTCATTATAGTCATGGTGGCACACAGACTAA
TGTGGTGCTATAGAGTACCCAAGAGATCTGTCATGATCCATGGGCAACAC
TTGGCCTGGCTTGAGCACTTGAAACCTCCAAGCCAATCTTCCTAGTAGTG
CCACTCCCTATGAGCCTATAGTGGCCATTTTCATTCAAACCACCACAGTG
TCCAACCCAAGTAAGCCAGCTCTCACACCAGCCTAAGGAAAACAGAGTTC
CGCCCCCATTTCCACCCCAATGTTGGGGAAATCAGAATCCCTGGGCCCAG
AATTGAAATAGGACAGGGCTTTTGAGGTTTCCCAGCCCCCCAAAAAAAAG
CGTCCTGATGTCTTTTCAAAAAGAAGTTTTAATGGTCCCCGCTTGAATGG
GGGCAAGGTCCACTTTCCTGGGAAATTAAATCCAGTCCTCCAAAATACCC
CAAAAATCTCCGCTCTCCTAAAATTTGGTCCAAATCTATAGCAATAGGTT
TTCAAATATGGTCCCCGGGCACCCTGTAATCTTCCTGTTGTCGTGTTTGA
CACTCGGTGTTCTCCCTTC
TCTTNTTGACGCATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAATAAAACTTGGNAGCTTGGAAGGAGACC
TTATCTGAGACCCTTTCTTTATAGAGACGCCCAGGCTAAAATGAGGTCAT
CAGAGCGCATTCCAACCCAGTCTGAATGGTGCCCTTGTAAGAAAGGGAAG
TTTAGACATGTTTAGAGAGACAACTGCGTGGAGGCAGAGGGAGGAGAAGA
TGGTTACCTACAAGCTAAGGAAAGTGGCCTCAAGAAATTCTCTTAGCGTT
CTTAGAAGGAGACAACCCTGCTGCGGAGTTGATTTCAGGTTTTTGGCTTT
TGGAAGGTGAGGCAGCAAGTTTCCATTGTGTAAGCCAAATGTGTTTGTTG
TTGAGGCCAAAGCATCTTATAGAAAGAAAGATTTGTGTTGGCTCCCTGTC
TCAGAGGGTTCCAGTTCACGGTGGCGGAGTCGGGTAGGATAGAGCAGTCC
GGTGTGGTAGCTGCAGCATGTGACAGATGTTCTCATATGACAGAGGATGA
GGAAGCAGAGGAGGAGGCTGAAGGAAGGGATGACTTTCAGGGTTGGTCTC
CAGTAGCTACTTTGCAGCTTCCCAAGACAGTACCAGGATAGTACCAGGAT
AGTGGGGGACACAGTACCAGGATAGTACCAGGATAGTGGGGGACACAGCA
CCAGGATAGTACCAGGATAGTGGGGGACACAGTTACCAGGATAGTACCAG
GATAGTGGGGGACACAGTATCAGGATAGTACCCAGGATAGTGTGGGGACA
CAGTACCAGTATAGTACCTGGAATAGTGTTGGAATTTGTATAATCAATAG
TCCGTTTTCTCAGCTTGTCAGATTCCTAATGGTCTCCTTTATCATATTTA
ATGCATAGTTAGCGTACTAGCTTCCTGGTGTGGTTGGTTTATTTCTGCAT
TTTATATTCATTTCTTATTCTTCCTTCCTTATTATATTTATTTCTCCTAT
AATTTTAATCTTTTTTTTTTCCTTTATAGGTAACTTTTTTGTTTTATTTC
TCTTTTTTTTTTTCTTCTTTTCAGTGTTGTTAAATATACTTTCTTTTTTA
GCCTTTTTTTTTCTGCTTATATCTTGATTTATAACTCTTTTTTGGTTCTA
TTATCATTTTTTCTCCTTTTATTTCTTCTTCTCTTCTCTTGTCCTTCTAT
TAATCTTTTATTCTTTCTTATATATCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_p20.g1 MSMg01no146_p20.g1 CHROMAT_FILE:
MSMg01no146_p20.g1 PHD_FILE: MSMg01no146_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:26 2005
         (506 letters)



>mm_chr4_8957652_8958558
          Length = 907

 Score =  911 bits (471), Expect = 0.0
 Identities = 497/507 (98%), Gaps = 4/507 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatagagacgcccaggctaaaatgaggtcatcagagcgcattccaacccagtctgaatgg 60
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tatagagacggataggctaaaatgaggtcatcagagcgcattccaacccagtctgaatgg 263

                                                                       
Query: 61  tgcccttgtaagaaagggaagtttagacatgtttagagagacaactgcgtggaggcagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgcccttgtaagaaagggaagtttagacatgtttagagagacaactgcgtggaggcagag 323

                                                                       
Query: 121 ggaggagaagatggttacctacaagctaaggaaagtggcctcaagaaattctcttagcgt 180
           ||||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 324 ggag---aagatggttacctacaagctaaggaaagtggcctcaagaaattctcttagtgt 380

                                                                       
Query: 181 tcttagaaggagacaaccctgctgcggagttgatttcaggtttttggcttttggaaggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttagaaggagacaaccctgctgcggagttgatttcaggtttttggcttttggaaggtg 440

                                                                       
Query: 241 aggcagcaagtttccattgtgtaagccaaatgtgtttgttgttgaggccaaagcatctta 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 aggcagcaagtttccattgtgtaagccaaatgtgtttgttgctgaggccaaagcatctta 500

                                                                       
Query: 301 tagaaagaaagatttgtgttggctccctgtctcagagggttccagttcacggtggcggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagaaagaaagatttgtgttggctccctgtctcagagggttccagttcacggtggcggag 560

                                                                       
Query: 361 tcgggtaggatagagcagtccggtgtggtagctgcagcatgtgacagatgttc-tcatat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 tcgggtaggatagagcagtccggtgtggtagctgcagcatgtgacagatgttcctcatat 620

                                                                       
Query: 420 gacagaggatgaggaagcagaggaggaggctgaaggaagggatgactttcagggttggtc 479
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacagaggatgaggaagcggaggaggaggctgaaggaagggatgactttcagggttggtc 680

                                      
Query: 480 tccagtagctactttgcagcttcccaa 506
           |||||||||||||||||||||||||||
Sbjct: 681 tccagtagctactttgcagcttcccaa 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 907
Length adjustment: 10
Effective length of query: 496
Effective length of database: 897
Effective search space:   444912
Effective search space used:   444912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)