BAC Information

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BAC

Clone NameMSMg01-147C14
Chromosome4 (Build37)
Map Location 49,542,311 - 49,649,383
singlet/doubletdoublet
Overlap geneZfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20
Upstream gene5730528L13Rik, Tmeff1, 2310039E09Rik, E130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50
Downstream genePpp3r2, LOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147C14.T7 (MSMg01no147_c14.b1)MSMg01-147C14.TJ (MSMg01no147_c14.g1)
ACCAG350506AG350507
length711706
length of high quality
(start - end)
561 (75 - 635)587 (68 - 654)
definitionCHROMAT_FILE: MSMg01no147_c14.b1 PHD_FILE: MSMg01no147_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:40 2005CHROMAT_FILE: MSMg01no147_c14.g1 PHD_FILE: MSMg01no147_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,648,823 - 49,649,383)(49,542,311 - 49,542,897)
sequence
CACTAATTTGCGGCGCTAAACGACTCCNATTCATACCGGCATCCGCGGAA
TTCTGAGCTCTCATGACACATCTCAATAAAACAAGACAGGGTTTCAAACT
GAGAACTGTTCTTGGAATGTGTTTTCATGTTCCTCGCCGATGTAGTAGAA
AGGAGTAGTTACTTCAGCTGTTCTTCATGTGCCTCTAAGGAGAAACATGT
ATTTGCCACGTGTAGCTTGCCCTTGTGACTGCACACATTACTCATGTTGA
TTCTTCTTAATCCTCAGAGTACAAACTGCCTGCTGCTCTGAATAAAGTTG
GCTACTGCATGATATTTTTGTCTGCCTCATTTTTCAGCCTTGCTCTCCTA
GACTCACACCAACTAGAACATCAACAAACATTAAACCATTCACCCAGGCT
CTTCTAAGACAGAAAGCTGCCTTCGAATTCTATAGCTAAAACCTATGAGA
AAACCATTTCCCTGCAGTTTTCCTCCTACACTCCTAGAAGCCCCAGCCTA
AAGGCAGATGCTATCTTTGTTTTCCATTGCCATTCCCTTGCTCAAAACTA
CTTATCAGATTAGGACATTTAGATCGTATCACCTGCCACTGTTGCTGGCC
TTACCCATACATTGCTCACGTCCCATCTCCCAGATCTAGAACCTAGCTTA
CCATCACTTGCTACAGTTCCACTTCCCATTATATTGCCTAAAAGTTTTAA
TTCCCACTTAG
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCACTGGGGAACGACCCTATGAGTGTAATTACTGT
GGGAAAACCTTTAGTGTGAGCTCTACCCTTATTAGACACCAGAGAATCCA
CACTGGAGAAAGGCCTTACCAGTGTAATCAGTGTAAACAGAGCTTCAGCC
AGAGAAGGAGCCTTGTGAAACACCAAAGAATTCACACTGGTGAGAAACCC
CATAAATGCAGTGACTGTGGAAAAGCCTTCAGTTGGAAATCCCACCTTAT
TGAACATCATAGGACCCACACTGGTGAGAAACCCTATCACTGTACCAAAT
GCAAGAAAAGTTTTAGTCGAAACTCATTGCTTGTTGAACACCAGAGAATT
CATACCGGAGAAAGACCTCATAAGTGTGGTGAATGTGGGAAAGCATTTAG
ATTAAGTACATACCTTATACAACACCAAAAAATACACACTGGTGAGAAGC
CTTTTCTTTGTATCGAATGTGGAAAGAGTTTCAGTCGGAGCTCATTCCTT
ATTGAACATCAGAGGATCCATACGGGGGAACGCCCTTATCAGTGCCAGGA
GTGCAGGAAAAGTTTCAGTCAACTCTGCAACCTTACCCGTCATCAGAGAA
TTCACACGGNGGACAAACCCCACAAGTGTGAGGAGTGTGGGAAAGCCTTC
AGTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_c14.b1 MSMg01no147_c14.b1 CHROMAT_FILE:
MSMg01no147_c14.b1 PHD_FILE: MSMg01no147_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:40 2005
         (561 letters)



>mm_chr4_49648623_49649583
          Length = 961

 Score = 1031 bits (533), Expect = 0.0
 Identities = 554/561 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataaaacaagacagggtttcaaactgagaactgttcttggaatgtgttttcatgttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 aataaaacaagacagggtttcaaactgagaactgttcttggaatgtgttttcatgttcct 702

                                                                       
Query: 61  cgccgatgtagtagaaaggagtagttacttcagctgttcttcatgtgcctctaaggagaa 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 cgccgatgtagtagataggagtagttacttcagctgttcttcatgtgcctctaaggagaa 642

                                                                       
Query: 121 acatgtatttgccacgtgtagcttgcccttgtgactgcacacattactcatgttgattct 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 641 acatgtatttgccacgtgtagcttgtccttgtgactgcacacattactcatgttgattct 582

                                                                       
Query: 181 tcttaatcctcagagtacaaactgcctgctgctctgaataaagttggctactgcatgata 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 581 tcttaatcctcagagtacaaactgcctgctgctctgaataaagttggctactgcatgaga 522

                                                                       
Query: 241 tttttgtctgcctcatttttcagccttgctctcctagactcacaccaactagaacatcaa 300
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ctttcgtctgcctcatttttcagccttgctctcctagactcacaccaactagaacatcaa 462

                                                                       
Query: 301 caaacattaaaccattcacccaggctcttctaagacagaaagctgccttcgaattctata 360
           |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 461 caaacattaaaccattcacccaggctcttctaagacggaaagctgcctttgaattctata 402

                                                                       
Query: 361 gctaaaacctatgagaaaaccatttccctgcagttttcctcctacactcctagaagcccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gctaaaacctatgagaaaaccatttccctgcagttttcctcctacactcctagaagcccc 342

                                                                       
Query: 421 agcctaaaggcagatgctatctttgttttccattgccattcccttgctcaaaactactta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 agcctaaaggcagatgctatctttgttttccattgccattcccttgctcaaaactactta 282

                                                                       
Query: 481 tcagattaggacatttagatcgtatcacctgccactgttgctggccttacccatacattg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tcagattaggacatttagatcgtatcacctgccactgttgctggccttacccatacattg 222

                                
Query: 541 ctcacgtcccatctcccagat 561
           |||||||||||||||||||||
Sbjct: 221 ctcacgtcccatctcccagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no147_c14.g1 MSMg01no147_c14.g1 CHROMAT_FILE:
MSMg01no147_c14.g1 PHD_FILE: MSMg01no147_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:40 2005
         (587 letters)



>mm_chr4_49542111_49543097
          Length = 987

 Score = 1073 bits (555), Expect = 0.0
 Identities = 579/587 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actggggaacgaccctatgagtgtaattactgtgggaaaacctttagtgtgagctctacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actggggaacgaccctatgagtgtaattactgtgggaaaacctttagtgtgagctctacc 260

                                                                       
Query: 61  cttattagacaccagagaatccacactggagaaaggccttaccagtgtaatcagtgtaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttattagacaccagagaatccacactggagaaaggccttaccagtgtaatcagtgtaaa 320

                                                                       
Query: 121 cagagcttcagccagagaaggagccttgtgaaacaccaaagaattcacactggtgagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagagcttcagccagagaaggagccttgtgaaacaccaaagaattcacactggtgagaaa 380

                                                                       
Query: 181 ccccataaatgcagtgactgtggaaaagccttcagttggaaatcccaccttattgaacat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 ccccataaatgcagtgactgtggaaaagccttcagttggaaatcccaccttattgagcat 440

                                                                       
Query: 241 cataggacccacactggtgagaaaccctatcactgtaccaaatgcaagaaaagttttagt 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagaggacccacactggtgagaaaccctatcactgtaccaaatgcaagaaaagttttagt 500

                                                                       
Query: 301 cgaaactcattgcttgttgaacaccagagaattcataccggagaaagacctcataagtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgaaactcattgcttgttgaacaccagagaattcataccggagaaagacctcataagtgt 560

                                                                       
Query: 361 ggtgaatgtgggaaagcatttagattaagtacataccttatacaacaccaaaaaatacac 420
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtgaatgtgggaaagcgttcagattaagtacataccttatacaacaccaaaaaatacac 620

                                                                       
Query: 421 actggtgagaagccttttctttgtatcgaatgtggaaagagtttcagtcggagctcattc 480
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 actggtgagaagccttttctttgtattgaatgtggaaagagtttcagtcggagctcattc 680

                                                                       
Query: 481 cttattgaacatcagaggatccatacgggggaacgcccttatcagtgccaggagtgcagg 540
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 681 cttattgaacatcagaggatccatacgggggaacgcccttatcagtgccaagagtgcggg 740

                                                          
Query: 541 aaaagtttcagtcaactctgcaaccttacccgtcatcagagaattca 587
           ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 741 aaaagtttcagtcaactttgcaaccttacccgtcatcagagaattca 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)