BAC Information

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BAC

Clone NameMSMg01-147E10
Chromosome4 (Build37)
Map Location 89,454,078 - 89,605,965
singlet/doubletdoublet
Overlap genenone
Upstream geneIfna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
Downstream geneZfp352, LOC619842, LOC435792, Ppia-ps4_804.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147E10.T7 (MSMg01no147_e10.b1)MSMg01-147E10.TJ (MSMg01no147_e10.g1)
ACCAG350591AG350592
length698700
length of high quality
(start - end)
200 (255 - 454)112 (191 - 302)
definitionCHROMAT_FILE: MSMg01no147_e10.b1 PHD_FILE: MSMg01no147_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:49 2005CHROMAT_FILE: MSMg01no147_e10.g1 PHD_FILE: MSMg01no147_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,605,766 - 89,605,965)(89,454,078 - 89,454,186)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATAA
GTCATTCATTTATTAAACCATTGTTTCCATCATAACAATGTTTATAGAAT
ATTTTCATTAAAGATTTTGAATTAAAGGCCGATAAATAGAAGACAACTTG
AAGAATATTTTTAAAAACCAGCTTTAGTTATTAAAATATTTATCTTTATA
GGAGCAAATAAAATGCTAGTGTCCTACACAGTAGGAGACGCTAGGCACTG
TTGAGCCTACCACATGGCAGCTTCCCAACTCTCTGACTTCTCTTCTGAAA
TTCTCCACATGTCAAAGGGACAGCATCATTTTGCTTTTAGGATGTGTGAG
TTCCTATACATCACAATATATATAGTTGTGAATGTTGCTCTTCTTGGTTT
ACCCCACATCTCACCCATGCCCAATAAGACTTAGTTAGGAATTATCTGTT
TGCCCTTGAAGACACACACAATCATGGTAAGTTCATAGAGGCCAGGATAA
AAGAAGGTTTGTTATTGGGAAAGTATAAGAAACGCCTATAAAGACCATGA
ATGATATGCGGGTTTGCTCACTCCCTCCCATTTTGTTTTTGCACATATTT
CTGATTCATTACCCGCTTCTTTTTCTATGTACACCATCCCCGCCGTCTCC
TGCTTGCATTCGATACAGACTACTTGCACCTCTCACCCACGCCCTCCT
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGCTTAATCAGGATCAGGTACATTTCACCGGGA
ATGGAAACACTTAGAGGTGAATAGTTCTGACATACTCTGTGCTATTTCGA
GGATTGAATGATTGCCTTGTACTCCTCAAAGCTCTTGTGATACAGAAAAT
TATCACTTGCTCAACCTAAGCAAGGAGTTGAAAGAGATGGGTCTGTCCTT
GACAGAAGACATCAATTTTACTCATCACTTTATATTCAGGACCCATGTAT
AGTGAAGTTAATTTACTTGTATTATGCAATGATTTCATCTCCGTAGGAAA
TTTTCTGTATGTTAACAATTTGATGAAGGCAAAAATTTGTCTTTATATAA
CTACCCCAATGGAGAAGACCAGGGCTACTCCTAAGATTAACTGAAACAGC
ATCATAGACAAAGATGTTGCTTTTCTACCTGAGCTAGGAATTCTAAAAGT
AGTCTACAATTAACCTAGAACAATGAAGAGATCTGAATACAGAAGATCGT
ACCTTGCAACTTTGATTGTAGATAATAAAGGATAGATATATGATCTAGCT
ACCATACCAACTGTGCGAAAAGATAAATATCCTTATTTATTATTTCTTGA
ATTAGTTATTTTCTTCATTTACATTTCCAATGCTACCCCGAAAGGCCACA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_e10.b1 MSMg01no147_e10.b1 CHROMAT_FILE:
MSMg01no147_e10.b1 PHD_FILE: MSMg01no147_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:49 2005
         (200 letters)



>mm_chr4_89605566_89606165
          Length = 600

 Score =  364 bits (188), Expect = e-105
 Identities = 197/200 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcctaccacatggcagcttcccaactctctgacttctcttctgaaattctccacatgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gcctaccacatggcagcttcccaactctctgacttctcttctgaaattctccacatgtca 341

                                                                       
Query: 61  aagggacagcatcattttgcttttaggatgtgtgagttcctatacatcacaatatatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aagggacagcatcattttgcttttaggatgtgtgagttcctatacatcacaatatatata 281

                                                                       
Query: 121 gttgtgaatgttgctcttcttggtttaccccacatctcacccatgcccaataagacttag 180
           ||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct: 280 gttgtgaatgttgctcttcttggtttagctcaaatctcacccatgcccaataagacttag 221

                               
Query: 181 ttaggaattatctgtttgcc 200
           ||||||||||||||||||||
Sbjct: 220 ttaggaattatctgtttgcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 600
Length adjustment: 8
Effective length of query: 192
Effective length of database: 592
Effective search space:   113664
Effective search space used:   113664
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no147_e10.g1 MSMg01no147_e10.g1 CHROMAT_FILE:
MSMg01no147_e10.g1 PHD_FILE: MSMg01no147_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:50 2005
         (112 letters)



>mm_chr4_89453878_89454389
          Length = 512

 Score =  211 bits (109), Expect = 1e-59
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacagaaaattatcacttgctcaacctaagcaaggagttgaaagagatgggtctgtcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacagaaaattatcacttgctcaacctaagcaaggagttgaaagagatgggtctgtcctt 260

                                                            
Query: 61  gacagaagacatcaattttactcatcactttatattcaggacccatgta 109
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacagaagacatcaattttactcatcactttatattcaggacccatgta 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 112
Length of database: 512
Length adjustment: 8
Effective length of query: 104
Effective length of database: 504
Effective search space:    52416
Effective search space used:    52416
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)