Query= MSMg01no147_e19.b1 MSMg01no147_e19.b1 CHROMAT_FILE:
MSMg01no147_e19.b1 PHD_FILE: MSMg01no147_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:51 2005
(568 letters)
>mm_chr4_114646516_114647483
Length = 968
Score = 1067 bits (552), Expect = 0.0
Identities = 561/564 (99%)
Strand = Plus / Plus
Query: 5 gaattccagacagcttgcgctatacagtgagaccctttccaaaaccaaaaccaaaccaaa 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagacagcttgggctatacagtgagaccctttccaaaaccaaaaccaaaccaaa 264
Query: 65 gtctaccaaagcctgcacaaagccttaaatacggaggttccaaaaactggcaatacaaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtctaccaaagcctgcacaaagccttaaatacggaggttccaaaaactggcaatacaaat 324
Query: 125 atttctgtgcataacaacaacaaaaacaaacaaaaaaccgtgagacacaataagaattta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttctgtgcataacaacaacaaaaacaaacaaaaaaccgtgagacacaataagaattta 384
Query: 185 tttctcttgcttacttatattttctgcttactctttttttaaatggatcaagaacttttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttctcttgcttacttatattttctgcttactctttttttaaatggatcaagaacttttc 444
Query: 245 aatcaactagcagtgactaatcagaaaatattcatttggggatggggacaatgagtctaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatcaactagcagtgactaatcagaaaatattcatttggggatggggacaatgagtctaa 504
Query: 305 attatttgttgcacagggttgacaacctgggttcaatctccagaacccatggtgtaagga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attatttgttgcacagggttgacaacctgggttcaatctccagaacccatggtgtaagga 564
Query: 365 gacaagtgatccccaaaattatcctttgatctccacaattagccctttggcactatgata 424
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 565 gacaagtgatccccaaaattatcctttgatctccacaattagtcctttggcactatgata 624
Query: 425 catatgtgtacccttgtctccctacccaatactcacactcacacaaataaaaagtaaaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catatgtgtacccttgtctccctacccaatactcacactcacacaaataaaaagtaaaat 684
Query: 485 tttaaaagaaaatatacagattaaaaaagatctcattaaaacagtaataaaaagaccaat 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 685 tttaaaagaaaatatacagattaaaaaagatctcattaaaacagtaataaaaagacaaat 744
Query: 545 gagatggcccagtgggtaaaagag 568
||||||||||||||||||||||||
Sbjct: 745 gagatggcccagtgggtaaaagag 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_e19.g1 MSMg01no147_e19.g1 CHROMAT_FILE:
MSMg01no147_e19.g1 PHD_FILE: MSMg01no147_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:51 2005
(623 letters)
>mm_chr4_114698810_114699832
Length = 1023
Score = 721 bits (373), Expect = 0.0
Identities = 389/399 (97%), Gaps = 8/399 (2%)
Strand = Plus / Minus
Query: 1 cttaaaaaggagggaggaaattcatgaggaaatatatgatgtattaaagaaaaacatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 cttaaaaaggagggaggaaattcatgaggaaatatatgatgtattaaagaaaaacatttt 332
Query: 61 ctgtcatattttgtgtgacaataatctagatgacagctcacactctataaataaacactt 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 331 ctgtcatattttgtgtgacaataatctagatgagagctcacactctataaataaacactt 272
Query: 121 taagtaactacagtttctaaatagcttaacagatctctttacgttatattagtcttttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 taagtaactacagtttctaaatagcttaacagatctctttacgttatattagtcttttac 212
Query: 181 ttaataagacagataaataaatggtaattgtttcaatgtggaattgcttatttaatatta 240
|||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ttaataagac--------aaatggtaattgtttcaatgtggaattgcttatttaatatta 160
Query: 241 gcatttttgatttagtatttaatgatttattaaaatctaaatttatataagcctcgaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gcatttttgatttagtatttaatgatttattaaaatctaaatttatataagcctcgaaga 100
Query: 301 atttagctctatttaaataaaaaagctgagtctgctagagagaaggttcccagcacccac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 atttagctctatttaaataaaaaagctgagtctgctagagagaaggttcccagcacccac 40
Query: 361 atcagatggcacacaaccaccgataactctagttccagg 399
|||||||||||||||||||||| ||||||||||||||||
Sbjct: 39 atcagatggcacacaaccaccggtaactctagttccagg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
