BAC Information

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BAC

Clone NameMSMg01-147H10
Chromosome4 (Build37)
Map Location 150,231,668 - 150,232,260
singlet/doubletsinglet
Overlap geneErrfi1
Upstream geneSpsb1, H6pd, Gpr157, Slc2a5, LOC435818, Car6, LOC100041882, Eno1, LOC666880, LOC384091, Rere, Slc45a1, LOC677027
Downstream genePark7, Tnfrsf9, Uts2, Per3, Vamp3, Camta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147H10.T7 (MSMg01no147_h10.b1)MSMg01-147H10.TJ (MSMg01no147_h10.g1)
ACCAG350728AG350729
length718714
length of high quality
(start - end)
606 (70 - 675)363 (87 - 449)
definitionCHROMAT_FILE: MSMg01no147_h10.b1 PHD_FILE: MSMg01no147_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:04 2005CHROMAT_FILE: MSMg01no147_h10.g1 PHD_FILE: MSMg01no147_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTNCACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCTTCCCAGTTTGGAAATAGGATGGTTAGCT
TCCTGTTCAAAAGCTCTTACAACCCATAGCTAAGAAGAAACTTCACAAGT
TACAGATTCTTAATTCACATGTTCTTTTCTGGCCTCGTCTCATGGCTGGC
TATGTTATTTAAGAAATCAGTTCTTAGCACTGTGGCACACAGACTTTTAA
TCCTAGCAGTAGCACTAGGCAGAGGCAGGCAGATCTCTAAGTTCTAAGGC
CAACCTGGTCTACAGAGTGATGTCTGGACAGCTGGAGCTACAAAGAGAAA
GCTTGTCTGGAAAACCAAAACAAAAAACTAAATAAAAAAAGGAAATCAGT
TGTGAATGTCGCCTATCTGTGGAGGCCCCCCCTGACCACCTGTGTAAATA
AGCTCTCTGCCTCCTTATCCTGCCATTGTGCCCTGCTCATTTCCTTGAGA
GATAACCCCTTGTGAAATTATCCTCATCCTCGTTAGATGGCCTCATCAGC
CAACAACCATTTTTCTTCATCTGATGAATCTAGTCCAGAAGAAGCATTCC
TATGTATTTGTGAAAATAAATGTTTGCTTTCTTAGATAGAGTTTGACCTG
AAGAAAGCTGAGTTCCAGTTCCTGCGATTGCAGGTAGCTAGCACATAGGT
CTTATGTAGCCCTCCTTT
CCACTTTTCACTATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGATCAAAATC
AAGCTGTTAGGCTTGGTGCAAAGGACCTTTACCCCTGAGACAGGCTGTGT
GCAGTAGTCATTTACCCCCGTCCATCCCACTGGACCTGAGACAGGCTGAC
TGTGATGGTCATTTAACCCCTGTCCATCCCATTGGACCTGAGACAGGTTG
ACTGTGATGGTCATTTACCCTCTGTCCATCCCACTGGACCTGAGACAGGC
TGACTGTGATGGTCATTTACCCCCGTCCATCCCACTGGACCTGAGACAGG
CTGACTGTGATGGTCATTTACCCTCTGTCCATCCCACTGGACCTGAGACA
GGCTGACTGTGATGGTCATTTAACCCCCGCCCATCCCACTGGACCTGAGA
CAGGTTGACTGTGATGGTCATTTAACCCCTGTCCATCCCACTGGACCTGA
TACAGGTTGACTGTGATGGTCATTTACCCCCTGTCCATCTCACTGGACCT
GAGACAGGTTGACTGTGATGGTCATTTACCCTCTGTCCATCCCACTGGAC
CTGAGACAGGCTGACTGTGATGGTCATTTACCCTCTGTCCATCCCACTGG
ACCTGAGACAGGCTGACTGTGATGGTCATTTACCCCCTGTCCATCCCCTT
GTACCTGAGACAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_h10.b1 MSMg01no147_h10.b1 CHROMAT_FILE:
MSMg01no147_h10.b1 PHD_FILE: MSMg01no147_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:04 2005
         (606 letters)



>mm_chr4_150231462_150232467
          Length = 1006

 Score = 1096 bits (567), Expect = 0.0
 Identities = 589/599 (98%), Gaps = 6/599 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   cagtttggaaataggatggttagcttcctgttcaaaagctcttacaacccatagctaaga 66
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 207 cagtttggaaataggatggttagcttcctgctcaaaagctcttacaacccatagctaaga 266

                                                                       
Query: 67  agaaacttcacaagttacagattcttaattcacatgttcttttctggcctcgtctcatgg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agaaacttcacaagttacagattcttaattcacatgttcttttctggcctcgtctcatgg 326

                                                                       
Query: 127 ctggctatgttatttaagaaatcagttcttagcactgtggcacacagacttttaatccta 186
           |||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||
Sbjct: 327 ctggctatgttatttaagaaatcagttcttagcactgtggcacac--acctttaatccta 384

                                                                       
Query: 187 gcagtagcactaggcagaggcaggcagatctctaagttctaaggccaacctggtctacag 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcagtagcactaggcagaggcaggcagatctctaagttctaaggccaacctggtctacag 444

                                                                       
Query: 247 agtgatgtctggacagctggagctacaaagagaaagcttgtctggaaaaccaaaacaaaa 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtgatgtctggacagctggagctacaaagagaaagcttgtctggaaaaccaaaacaaaa 504

                                                                       
Query: 307 aactaaataaaaaaaggaaatcagttgtgaatgtcgcctatctgtggaggccccccctga 366
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 505 aactaaataaaaaaaggaaatcagttgtgaatgtcgcctatctgtggaggcctcccctga 564

                                                                       
Query: 367 ccacctgtgtaaataagctctctgcctccttatcctgccattgtgccctgctcatttcct 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccacctgtgtaaataagctctctgcctccttatcctgccattgtgccctgctcatttcct 624

                                                                       
Query: 427 tgagagataaccccttgtgaaattatcctcatcctcgttagatggcctcatcagccaaca 486
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgagagataaccccatgtgaaattatcctcatcctcgttagatggcctcatcagccaaca 684

                                                                       
Query: 487 accatttttcttcatctgatgaatctagtccagaagaagcattcctatgtatttgtgaaa 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 accatttttcttcatctgatgaatctagtccagaagaagcattcctatgtatttgtgaaa 744

                                                                      
Query: 547 ataaatgtttgctttcttagatagagtttgacctgaagaaagctgagttccagttcctg 605
           |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||
Sbjct: 745 ataaatgtttgctttcttaga----gtttgacctgaagaaagctgagttccagttcctg 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)