Query= MSMg01no147_j14.b1 MSMg01no147_j14.b1 CHROMAT_FILE:
MSMg01no147_j14.b1 PHD_FILE: MSMg01no147_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:13 2005
(693 letters)
>mm_chr4_47482139_47483231
Length = 1093
Score = 890 bits (460), Expect = 0.0
Identities = 469/472 (99%)
Strand = Plus / Minus
Query: 221 ccctacttccatgtccttgtataggctgccagcagaaggcatggcgcagactagaggtac 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1093 ccctacttccatgtccttgtataggctgccagcagaaggcatggcgcagactagaggtac 1034
Query: 281 gttttcccacttgaagatcagaattaaaggaagacctgccaacttcaagttaagcaaaaa 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 gttttcccacttgaagatcagaattaaaggaagacctgccaacttcaagttaagcaaaaa 974
Query: 341 tccctcccaggtgtgccctccattgttagattttagttcaatccagatggagtcaagttg 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 tccctcccaggtgtgccctccattgttagattttagttcaatccagatggagtcaagttg 914
Query: 401 acaaccaagaatggccaccaccggggacactccgcatctgaactatataccaagcttcat 460
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 913 acaaccaagaatggccaccaccggggacactccgcatctgaactatatactaagcttcat 854
Query: 461 atttcagacgtgtttcttaatgttattggtgtctccagccctcgtagtgtttgtatcgta 520
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 853 atttcagacgtgtttcttaatgttgttggtgtctccagccctcgtagtgtttgtatcgta 794
Query: 521 ttctctgcagtttagcatgccagtgttgcctgtccttcacgtaaatgcctttgtgtgaag 580
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 793 ttctctgcagtttagcatgccagtgtttcctgtccttcacgtaaatgcctttgtgtgaag 734
Query: 581 cttgcttgacaccccgcccccaccccacctctcaactcccctatccctgtgacactgccc 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 cttgcttgacaccccgcccccaccccacctctcaactcccctatccctgtgacactgccc 674
Query: 641 agtaataactgttcgttgttgtttacctgttgcttgtaagtgcaagtattaa 692
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 agtaataactgttcgttgttgtttacctgttgcttgtaagtgcaagtattaa 622
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_j14.g1 MSMg01no147_j14.g1 CHROMAT_FILE:
MSMg01no147_j14.g1 PHD_FILE: MSMg01no147_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:13 2005
(662 letters)
>mm_chr4_47375641_47376703
Length = 1063
Score = 1249 bits (646), Expect = 0.0
Identities = 658/662 (99%), Gaps = 1/662 (0%)
Strand = Plus / Plus
Query: 1 atgaacaatgctccccctccatcccactccaccccaagcttatagtagtcaaagaatttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaacaatgctccccctccatcccactccaccccaagcttatagtagtcaaagaatttc 260
Query: 61 caaggggtaaagttattgctggacttggcatttctgatttcttgttctgaggctcaatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaggggtaaagttattgctggacttggcatttctgatttcttgttctgaggctcaatct 320
Query: 121 tcaacactttcctcgggttcagtttagaacccactgacactatccttccctatttaaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaacactttcctcgggttcagtttagaacccactgacactatccttccctatttaaggc 380
Query: 181 tctgatccaagtgtggacatttgaatgcctaataccagtggaacagctgatgttaaagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgatccaagtgtggacatttgaatgcctaataccagtggaacagctgatgttaaagct 440
Query: 241 gggacgtctgaattaagctttgctagaggctagaggataatggttagagaacaacatgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggacgtctgaattaagctttgctagaggctagaggataatggttagagaacaacatgaa 500
Query: 301 actattcgggctggcttataaagacgttttcctaatgttcttaaattggccagtagccat 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actatttgggctggcttataaagacgttttcctaatgttcttaaattggccagtagccat 560
Query: 361 ctggcagacatcatcaaagaatggtcaccaaagatgaacagaaccag-catgtttttctt 419
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 ctggcagacatcatcaaagaatggtcaccaaagatgaacagaaccagacatgtttttctt 620
Query: 420 ctaacaagtccagcgaggccagatgctgaaagtgtctttgctttgggtttcctgtttgaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaacaagtccagcgaggccagatgctgaaagtgtctttgctttgggtttcctgtttgaa 680
Query: 480 aagtgacttctgggtaatgggtattaaaaatgattattttaggagagataacatgtaccc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagtgacttctgggtaatgggtattaaaaatgattattttaggagagataacatgtaccc 740
Query: 540 agagtgtgttcttctgttttaccagttttatagtaaccctgggatatgcacgttagcttg 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 741 agagtgtgttcttctgttttaccagttttatagtaaccctgggatatgcacattagcttg 800
Query: 600 aggagtattctctattcggtgtatcctaaaatcttcctgcttcttaatagaatccttctt 659
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 801 aggagtattctctattcggtgtatcctaaaatcttcctgcttcttagtagaatccttctt 860
Query: 660 tg 661
||
Sbjct: 861 tg 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1063
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1053
Effective search space: 686556
Effective search space used: 686556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
