Query= MSMg01no147_k06.b1 MSMg01no147_k06.b1 CHROMAT_FILE:
MSMg01no147_k06.b1 PHD_FILE: MSMg01no147_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:16 2005
(368 letters)
>mm_chr4_139505811_139506578
Length = 768
Score = 700 bits (362), Expect = 0.0
Identities = 362/362 (100%)
Strand = Plus / Minus
Query: 5 gaattcttgcaaaaacaaaacaaaacaaggaccttctgtaactaaatcaaatcctagggg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gaattcttgcaaaaacaaaacaaaacaaggaccttctgtaactaaatcaaatcctagggg 507
Query: 65 gccaaatcaaattcgaccctcctggagagaaggttttcctgccaggattggacccgaaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gccaaatcaaattcgaccctcctggagagaaggttttcctgccaggattggacccgaaag 447
Query: 125 ctttaaatggctgattctttctgtctctggcttccacttactcagcccccctcccattcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctttaaatggctgattctttctgtctctggcttccacttactcagcccccctcccattcc 387
Query: 185 cagacgcagctgggggtgggggtggaggattgctggggcaaattagtctcctggagaatc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cagacgcagctgggggtgggggtggaggattgctggggcaaattagtctcctggagaatc 327
Query: 245 cacgcagttcacgtctcctggattagtagccccaccccctttaaaaagacatttagggtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cacgcagttcacgtctcctggattagtagccccaccccctttaaaaagacatttagggtg 267
Query: 305 gcgatctgggaagctggggctctggggctctgagagtctggggagttgagttggggatct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gcgatctgggaagctggggctctggggctctgagagtctggggagttgagttggggatct 207
Query: 365 gg 366
||
Sbjct: 206 gg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space: 272481
Effective search space used: 272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_k06.g1 MSMg01no147_k06.g1 CHROMAT_FILE:
MSMg01no147_k06.g1 PHD_FILE: MSMg01no147_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:16 2005
(402 letters)
>mm_chr4_139368577_139369378
Length = 802
Score = 746 bits (386), Expect = 0.0
Identities = 398/406 (98%), Gaps = 8/406 (1%)
Strand = Plus / Plus
Query: 1 actcctgtaaagtcggagtaggtggtagatgtttttattgttttgttttcttaagacagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcctgtaaagtcggagtaggtggtagatgtttttattgttttgttttcttaagacagg 260
Query: 61 gtcagggtctcactatatataatgtaggcaggtctccaacctgtgtgatcccccagcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcagggtctcactatatataatgtaggcaggtctccaacctgtgtgatcccccagcctc 320
Query: 121 agtctccacaatgctgggtatggggttacagatgggatcatcttgcttgcttgcttgctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtctccacaatgctgggtatggggttacagatgggatcatcttgcttgcttgcttgctt 380
Query: 181 gcttgcttgcttgcttgcttgtttgcttgcttgcttggtatcttcaatacatagctgcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttgcttgcttgcttgcttgtttgcttgcttgcttggtatcttcaatacatagctgcct 440
Query: 241 ccctcctctcaaggttcaggtcaaaccacttctgccctgcaactttctccgaaaagcacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctcctctcaaggttcaggtcaaaccacttctgccctgcaactttctccgaaaagcacc 500
Query: 301 taccgcctccccacccccaccctctgcttcccaccctgg----cccccttcccactccca 356
||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 501 taccgcctccccacccccaccctctgcttcccaccctggttttc----ttcccactccca 556
Query: 357 gacccatcctggcttcctgaaagtccccctagtttgtggaccagcc 402
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gacccatcctggcttcctgaaagtccccctagtttgtggaccagcc 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
