BAC Information

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BAC

Clone NameMSMg01-148B03
Chromosome4 (Build37)
Map Location 98,454,442 - 98,454,619
singlet/doubletsinglet
Overlap geneAnkrd38
Upstream geneNfia, LOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl, L1td1
Downstream geneLOC100039541, Usp1, Dock7, Angptl3, LOC665193, Atg4c, LOC665212, LOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148B03.T7 (MSMg01no148_b03.b1)MSMg01-148B03.TJ (MSMg01no148_b03.g1)
ACCAG351175AG351176
length725696
length of high quality
(start - end)
181 (80 - 260)603 (77 - 679)
definitionCHROMAT_FILE: MSMg01no148_b03.b1 PHD_FILE: MSMg01no148_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:51 2005CHROMAT_FILE: MSMg01no148_b03.g1 PHD_FILE: MSMg01no148_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTTCATTCCTTCCACGTGTTTAGACCCCTTTAGAGTG
AAAAGTTATGAAGCCCTTCCTCAGAGGGCTGGGTTTCAACTCCATTTAAT
AGCTGTAGCCTTGAAGTGATTAGTTTTAAGTGAAACGCAAGGGGGGGGGG
AGGGAGTGAGGGAGACTTACAGGCCTCCACAGAGTTTTTCATTCTTAAAT
CCAGCCTGATGTGTATGTAATGATCCCTATAAGTCATTTGATCCCACATT
TGATGGATCTCATTCCGAATTCTAGCCTAAGGCTTTTTTTTCTGATGTCC
CAGGTGCTGCTTACAGCTTACAGTCACAGGCCTGCCTACCTGTGGTGCTC
TCCATTTTTACAGAGCTGGATTCTTGCCCCCCCTTTTGTCCTTCTTTCTC
TCGCTCTATCGCCTTTTCTTTATTCGTTCTCAGCACTTCTTATCCCCTTT
TCTCTACCACTTCTTTTCTCTCGTGATGCTCGCTTAAGTTCTTCCTGTCG
TTTTTGCTTTTCTCTCTCGTACTCCATTCTCTCCCCCTCCTCCCCCGGTG
CCTGTCGTCGCCCTCTTTTCCCCCTCGCCCATTCTCTATTCCCCCCGTTC
CCCCTTTCTTCTTCTTCTTTCCCCTCTCTTCCCTCTTTTCCGTTCTTGCT
TTCTTCTCCTCTTTCCCTTCCTTTG
NCCACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAGGAAGGCTAGGAGATGGGG
GGTCACACTTACTGTGTTCCTATGGAAACTTGGAATGTTTGTTTTATATG
GATTTTTATTCAGTTTTCCAACATGATACTAACGAGTGCCCTCAGCTGCT
GAGCAAGTGTATGTAGCTTGTGCATTGGCTGAAGCTCATGTTGTGACCCA
TTGTGAAAATAAAGTATCTTGAAATAATTGGGCATCAGGGAATGTTTGCA
AGTATCCCTTAAAGAAGACACCAACTTCAGCACAGCCTGCTGTATCCGGT
GAGTCTAGCTCAGCACAGCACATAGGAGAGGTGGATGGCACAAGGCTGTG
CCCTCTCTGTACAGCATCAATTTGCTTAGCCCATCCCAAGTGTGTGCAGT
TGACTGTGGACTTTGGGGCCCAGTGTCTGTTGGTGAGGAATGTCATTTGC
CTAGTGACCTGTTGGCATGGCCACTTCCTAGGGAGGACATCGAGGCTCTT
TGAACCTTGCCTGCAGAAACCCTGACTGTTTCCTCAACCCTTGACTTCAC
CTGCATCATCAGCTAGTAACAGTTGGAAGTATCATACAGCATTTGGCAGT
CAATTTCCTGTAATAAATTCAACAACAGCAAAAACAAAAAAAAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_b03.b1 MSMg01no148_b03.b1 CHROMAT_FILE:
MSMg01no148_b03.b1 PHD_FILE: MSMg01no148_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:51 2005
         (181 letters)



>mm_chr4_98454242_98454819
          Length = 578

 Score =  308 bits (159), Expect = 2e-88
 Identities = 175/181 (96%), Gaps = 3/181 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttagacccctttagagtgaaaagttatgaagcccttcctcagagggctgggtttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 378 tgtttagacccctttagagtgaaaagttatgaagcccttcctcagagagctgggtttcaa 319

                                                                       
Query: 61  ctccatttaatagctgtagccttgaagtgattagttttaagtgaaacgcaaggggggggg 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 318 ctccatttaatagctgtagccttgaagtgattagttttaagtgaaatgcaaggggggggg 259

                                                                       
Query: 121 gagggagtgagggagacttacaggcctccacagagtttttcattcttaaatccagcctga 180
           |  ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 258 g--gga-tgagggagacttagaggcctccacagagtttttcattcttaaatccagcctga 202

            
Query: 181 t 181
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 578
Length adjustment: 8
Effective length of query: 173
Effective length of database: 570
Effective search space:    98610
Effective search space used:    98610
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)