Query= MSMg01no148_c11.b1 MSMg01no148_c11.b1 CHROMAT_FILE:
MSMg01no148_c11.b1 PHD_FILE: MSMg01no148_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:57 2005
(577 letters)
>mm_chr4_91339892_91340869
Length = 978
Score = 1036 bits (536), Expect = 0.0
Identities = 569/588 (96%), Gaps = 17/588 (2%)
Strand = Plus / Plus
Query: 5 gaattctttccccctctctttaccatctggtatctgagctcatatttgaaacattagctg 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gaattctttccccctct-tttaccatctggtatctgagctcatatttgaaacattagctg 251
Query: 65 ttcagaaatgagggtttgttgttgttatcttttttttt-------------gtctccagt 111
|||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 252 ttcagaaatgagggtttgttgttgttatcttttttttttttttttttttttgtctccagt 311
Query: 112 aggcagagagtttctctgaagatccagtgcttatctcttcagaagaaaaaaa-tgttata 170
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 312 aggcagagagtttctctgaagatccagtgcttatctcttcagaagaaaaaaaatgttata 371
Query: 171 aatgtgaagggagccctgaactaatatttaacagtcacataaaagcttaagaaaatgcag 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aatgtgaagggagccctgaactaatatttaacagtcacataaaagcttaagaaaatgcag 431
Query: 231 agtacaaagtcagtctaaggagatgccatttccaatttattttcataatctaattctgcc 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 agtacaaagtcagtctaaggagatgccatttccaatttattttcataatctaattctgcc 491
Query: 291 ttgcctgtaaaggttaatctaaactcagcagaaccaagcctgtccactgcttgcttgtta 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ttgcctgtaaaggttaatctaaactcagcagaaccaagcctgtccactgcttgcttgtta 551
Query: 351 taggccctgctacattatttgaaacacaccaaaatgaatacagcccttgttcacaatcta 410
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 552 taggccctgctacattatttgaaacatagcaaaatgaatacagcccttgttcacaatcta 611
Query: 411 gttgttatttttttt-ccagttgtagcagataagatttttttcccaagtaactctcaaat 469
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 612 gttgttatttttttttccagttgtagcagataagatttttt-cccaagtaactctcaaat 670
Query: 470 tatcagcagtcatagtgtgtgcagtggcaaaaaaaaggatctcagaaaactcctagagaa 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tatcagcagtcatagtgtgtgcagtggcaaaaaaaaggatctcagaaaactcctagagaa 730
Query: 530 gcatttgttttgaaaagcaggtggatttctgagtttgaggccagcctg 577
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gcatttgttttgaaaagcaggtggatttctgagtttgaggccagcctg 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 978
Length adjustment: 10
Effective length of query: 567
Effective length of database: 968
Effective search space: 548856
Effective search space used: 548856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_c11.g1 MSMg01no148_c11.g1 CHROMAT_FILE:
MSMg01no148_c11.g1 PHD_FILE: MSMg01no148_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:57 2005
(649 letters)
>mm_chr4_91420465_91421513
Length = 1049
Score = 569 bits (294), Expect = e-166
Identities = 303/306 (99%)
Strand = Plus / Minus
Query: 344 catgacagctcctgattcgttgctcgcccatcaccccattactacactgcgagatgggca 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 catgacagctcctgattcgttgctcgcccatcaccccattactacactgcgagatgggca 986
Query: 404 gagactaggagtgagttcactcttgcacttgtacataaggcttgcttactagttaggtgc 463
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 985 gagactaggagtgagttcactcttgcacttgtacataaggcttgtttactagttaggtgc 926
Query: 464 agtggaagccagcgccatcttataatggcgattgctcacggcatgcacgcgattgctcgt 523
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 925 agtggaagccagcgccatcttataatggcgattgctcacggcacgcacgcgattgctcgt 866
Query: 524 ggtacagctctccacactacccaactctcaaaatttttgaattagtattttataactata 583
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ggcacagctctccacactacccaactctcaaaatttttgaattagtattttataactata 806
Query: 584 atgataatagatatggtaccaatctctatttttgtatcactaaaataataaaaaattata 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atgataatagatatggtaccaatctctatttttgtatcactaaaataataaaaaattata 746
Query: 644 gtatta 649
||||||
Sbjct: 745 gtatta 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
