TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAACCGCGGA
ATTCTGTATTTAGATACCCAGAAACCAGAATGTGAGTATATCAAAGTCAT
ACAGTGAAGTTAGGCACAAAGCACAGATACTTAAGCCCAGATTATATCAC
TGTTTTTTTTATTTATATATATAACAGTTGCTGTATGAACACTGCATGCC
GTAAATTAATTAGAAACAAAAACTCTTTGGATATCATTTTCTTTATACTA
GCTACTGTGAAAAGTTATTTTCCCCTCCTTACTAGACACTAAATTCTAAG
GTCAAGCACTGATTTCATCTCACACTTAAATAGTGTCTGGAAAGCTGTGA
CATCAGAAATTGCATGGATGAGCTATTAAATGGTTAAAGATGTGCATTTT
TATACTTTAAGGAGTGAGCATTCCCATTTGTACAATATATTAAAACATGG
AAAGTACTAATTTCCTTGCCAAGACTCTAGAACTACATGCTTTAATGATT
CCTAAAGATAACGTTCTCTTCCTGCAGGCAGATCATGGTGTCTTTAGTGT
GCTTTGTTGTGAGGCAATATCAACTTGTGTTGTGCATATATCTGCTGTTA
CCTTTCCTCCGGTTGGGTCATACTAGCATGTTCAGAGGACATTANAACAA
ATAGAACAGCTCATTTTGGGGGTATGTAGTTTGATCTAGATGTTTACACA
TCTAGTGAAATTCATTTAAAAAGGACTTCTGAACATAGCTG

AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCGAATTCCCAGAGACTTTGACAGCATGTCAGTGTCTGCA
CTGCTCCTCATCAGGTGATATCTTAGAGCAGAGAGAAGTGGACATAAACC
CTACTGTAACCCAGAGGCCCATTCCAATTGATAATCACTGGGAAATGAAA
AAAAAAATAGTTTTCTCCAAAGGAGTCTTACCAGGGAAACAAATCACTCC
TAAGGGTAGGTCCTATACCCAGCAGTAGATGGTCAACAGAAGACATACTC
AGCAGCATCTTTGGGAATTTTCTGTCTTATAATGTAGTATCAGGGAAGTT
TTTGTTTAAACCTTACAGATCCTTTGTGCATATAACATGGCTTCTAGTTT
TGTGTTTTTATAGTATGCGTGTGAAAACTTGTGTGTATCTGCACCCGTAC
ATGTTTCTTGTGCCTTTTCTTTGGCTTTTCCCTTCTGTTTGTTTGTTTTT
GTTGTATTTCATTGGTTTTGTTTTTTATTATTTTATTTTTATTCTTTATA
TACCTATTTGTTTTCTTAGGAGATACAGGAAGAGTATGTATTTGGAGAGA
AACATGGAGATGTTGGGGAAGGCATAATCATAGTAAGTTGTATGAAAATA
TATTTTTAACAATATAATTTTATCCTAAACCATGACTCATTAAAATTTTT
GGAAAACTAATTTTATCCTAAACCATGACTCATTAN

Query= MSMg01no148_d21.b1 MSMg01no148_d21.b1 CHROMAT_FILE:
MSMg01no148_d21.b1 PHD_FILE: MSMg01no148_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:04 2005
         (652 letters)



>mm_chr4_35991471_35992522
          Length = 1052

 Score = 1093 bits (565), Expect = 0.0
 Identities = 627/648 (96%), Gaps = 1/648 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaattctgtatttagatacccagaaaccagaatgtgagtatatcaaagtcatacagtgaa 61
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 gaattctgtatttagaaactcagaaaccagaatgtgagtatatcaaagtcatacagtgaa 915

                                                                       
Query: 62  gttaggcacaaagcacagatacttaagcccagattatatcactgttttttttatttatat 121
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 914 gttaggcacaaagcacagatacttaagcccagattatatcactg-tttttttatttatat 856

                                                                       
Query: 122 atataacagttgctgtatgaacactgcatgccgtaaattaattagaaacaaaaactcttt 181
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 855 atataacagttgctgtatgaatactgcatgccgtaaattaattagaaacaaaaactattt 796

                                                                       
Query: 182 ggatatcattttctttatactagctactgtgaaaagttattttcccctccttactagaca 241
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 795 ggatatcattttctttatactagctactgtgaaaagttcttttcccctccttactagaca 736

                                                                       
Query: 242 ctaaattctaaggtcaagcactgatttcatctcacacttaaatagtgtctggaaagctgt 301
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 735 ctaaattctaaggtcaagcactgatttcatctcacacttaaatagtgtctagaaagctgt 676

                                                                       
Query: 302 gacatcagaaattgcatggatgagctattaaatggttaaagatgtgcatttttatacttt 361
           |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 675 gacatcagaaattgcatgaatgagctattaaatggttaaagatgtgtatttttatacttt 616

                                                                       
Query: 362 aaggagtgagcattcccatttgtacaatatattaaaacatggaaagtactaatttccttg 421
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 615 aaggagtgagcattcccatttgtacaatatattaaaacatgggaagtactaatttccttg 556

                                                                       
Query: 422 ccaagactctagaactacatgctttaatgattcctaaagataacgttctcttcctgcagg 481
           |||||||||||||||| | ||||||||| |||| ||||||||| |||||||||||| |||
Sbjct: 555 ccaagactctagaactgcgtgctttaataattcgtaaagataaagttctcttcctgtagg 496

                                                                       
Query: 482 cagatcatggtgtctttagtgtgctttgttgtgaggcaatatcaacttgtgttgtgcata 541
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 495 cagatcatggtgtctttagtgtgctttgttgtgaggcaatatcagcctgtgttgtgcata 436

                                                                       
Query: 542 tatctgctgttacctttcctccggttgggtcatactagcatgttcagaggacattanaac 601
           ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||
Sbjct: 435 tatctgctgttacctttcctctggttggctcatactagcatgttcagaggacattaaaac 376

                                                           
Query: 602 aaatagaacagctcattttgggggtatgtagtttgatctagatgttta 649
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aaatagaacagctcattttgggggtatgtagtttgatctagatgttta 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)