Query= MSMg01no148_g08.b1 MSMg01no148_g08.b1 CHROMAT_FILE:
MSMg01no148_g08.b1 PHD_FILE: MSMg01no148_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:17 2005
(284 letters)
>mm_chr4_63710755_63711439
Length = 685
Score = 441 bits (228), Expect = e-128
Identities = 261/276 (94%), Gaps = 11/276 (3%)
Strand = Plus / Minus
Query: 12 gaattcaattcaccccc---aactatgaaaatctctgtggaggaagtacaataggttgaa 68
|||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 gaattcaattca--cccaataactatgaaaatctctgtggaggaagttcaataggttgaa 328
Query: 69 actagggctatggcagttagcctgaaatatcggagtcagtttactttggagattctggag 128
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 327 actagggctatggcagttagcctgaaatatcggagtcagtttactgtggagattctggag 268
Query: 129 tagccacattgatcatggcaccactcacaatccatctacctgtcatctgcagacgaaagg 188
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 267 tagccacattgatcatggcaccactcacaatccatctacctgtcatctgcagacga---g 211
Query: 189 aggaggaggaggaggaggaggaggaggaggcactagttacacccagagaagttttattca 248
||||||||||||||||||| ||| | ||||||||| |||||||||||||||||||||||
Sbjct: 210 aggaggaggaggaggaggaagag-a--aggcactagatacacccagagaagttttattca 154
Query: 249 gccataaagaaaaatacagctacgccatttgcagaa 284
||||||||||||||||||||||||||||||||||||
Sbjct: 153 gccataaagaaaaatacagctacgccatttgcagaa 118
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 685
Length adjustment: 9
Effective length of query: 275
Effective length of database: 676
Effective search space: 185900
Effective search space used: 185900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no148_g08.g1 MSMg01no148_g08.g1 CHROMAT_FILE:
MSMg01no148_g08.g1 PHD_FILE: MSMg01no148_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:17 2005
(340 letters)
>mm_chr4_63577735_63578470
Length = 736
Score = 625 bits (323), Expect = 0.0
Identities = 335/341 (98%), Gaps = 5/341 (1%)
Strand = Plus / Plus
Query: 1 agaggggaagagtt-atttatgcccttatcatctggaatgtatttttatacactgtaaat 59
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 agaggggaagagtttatttatgcccttatcatctggaatgtatttttatacactgtaaat 259
Query: 60 tagataagctagctgagtgccgtgcgtggtatggatggggaattatgtgctctgggttta 119
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tagataagctagctgagtgtcgtgcgtggtatggatggggaattatgtgctctgggttta 319
Query: 120 agactcagctcttacgctaagttgctgtttgaatttggttgcttcctacccctttttgat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agactcagctcttacgctaagttgctgtttgaatttggttgcttcctacccctttttgat 379
Query: 180 ggtgttgcttgatgtaaacccgtgaaacaggaaggagagagagctcactcacagaacatt 239
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 380 ggtgttgcttgatgtaaacccgtgaaacaggaaggagag----ctcactcacagaacatt 435
Query: 240 ttcctagtatgtgcgagtttgatccctagagccacataaaagggtgggtctattagacag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttcctagtatgtgcgagtttgatccctagagccacataaaagggtgggtctattagacag 495
Query: 300 atatgacttccagcacctaaagtgattaaggttaacttagg 340
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atatgacttccagcacctaaagtgattaaggttaacttagg 536
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 736
Length adjustment: 9
Effective length of query: 331
Effective length of database: 727
Effective search space: 240637
Effective search space used: 240637
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
