BAC Information

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BAC

Clone NameMSMg01-148I02
Chromosome4 (Build37)
Map Location 116,376,129 - 116,529,376
singlet/doubletdoublet
Overlap geneMmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336
Upstream gene4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1
Downstream geneLOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148I02.T7 (MSMg01no148_i02.b1)MSMg01-148I02.TJ (MSMg01no148_i02.g1)
ACCAG351481AG351482
length695702
length of high quality
(start - end)		604 (46 - 649)513 (82 - 594)
definitionCHROMAT_FILE: MSMg01no148_i02.b1 PHD_FILE: MSMg01no148_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:25 2005CHROMAT_FILE: MSMg01no148_i02.g1 PHD_FILE: MSMg01no148_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,528,777 - 116,529,376)(116,376,129 - 116,376,641)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGAAGGACACCGAGAGTAGATATTCTCACCAGAATAATTGTTCT
CACAACAGGAAGAACAGAATTCCCATGGTATGACTTCAACCTCTTCCCCT
AAGGGAGACAACCACGAGCTATTATGTAATGGTCAGACTAGGCTGCGTAG
AACGACCTTGTCTCAAAAACTGAAACAGCCAAATAAAGAAAAGAATACCC
TACAGTTTTCTGAGACACCGAGTTTGCTGGCCTGCATCTCATTTGCTACC
CTCATCCTCTGTTAGAAAATACATGCTGGAGTTTCTTGTGTTGGTTTACA
GGCAATTCCACCAGGCTTCTCCCAGGGACCTGGGACCTAGCTATGGCTTA
AGTCATTACCTGCCACCACCCGCATGCAGGCATAGAAAAGGACTGCTTGC
CACCCCAGCTGGCTCTCTCTCTGTTCCCATGTATTCCTGGCTGGACTCTT
TCTCCCCTTTTCTGTCCTTCTCTGTGCCCCCTTCTCTGCCTCAAGGCTCT
GCTCCTGTCTGTTTGCCTCTACCCCTTCTTAAGCTGCTTACTCCTCTCCG
TTCTCCCACATAATCTTCCTTTATTCCCCCTTCTCTGCTGCATTGTGTGA
TTTCTCAGGCCATACCTCGGCATTAGGCCCGTCAGGCACACACAA

CCCCCTCCCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGGTTTAGTAAGCAAGG
AAAGAGGAAGCTCAGATGTAGTGCTAGGGTGTTCTGAGGGTTGGGCTAAG
CCTAATAGGGCCAAGCGTTGGGCAGGTGGGGTGGAAAAGTAGATCTTCTG
TTCTTCGGAGTACCGTTCTTCAGGAGTCACAGCATCACGGTAAGTCCAGT
CCCGCCAATGGAAATTGAAACCTTCAAGCAGAGTGATGCGGCCAGCTCTT
GTAGGCACACAGTCAGGGGGCTTTCTGGGTGGTAAATTTGGCACTTCAAT
CCCTGGCAGCAACATTACCCCTCGGATGGCAAACCAGCCCCCAAATCGGG
GGTGTATGCACACACCTGCTATGTGCTGCCCAGAGGACAAAGAAAAAGCA
GGGTTACAGAGGTCATTTTGACACTAGGTTCAACGACTATTGGAAACTTT
TTATCCCCCAAGTATGGGTATGAGTGTTTTGCTTGCATGCAAGCAGTACC
CACAGCGGCCAGCAGAGGGTGTCAATCTAAAAACGAGTTGCAGATGGCTC
TGAGCAGCCACGTGAGTGCTTGGGATTGAACATGGTTCATACAAAAGCAA
CAAATGTTCCTAATCTTTTTCTAATTCTTTCCCACTCAGTGTACACTCAT
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_i02.b1 MSMg01no148_i02.b1 CHROMAT_FILE:
MSMg01no148_i02.b1 PHD_FILE: MSMg01no148_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:25 2005
         (604 letters)



>mm_chr4_116528573_116529576
          Length = 1004

 Score = 1106 bits (572), Expect = 0.0
 Identities = 593/600 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagaaggacaccgagagtagatattctcaccagaataattgttctcacaacagg 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gaattccagaaggacacagagagtagatattctcaccagaataattgttctcacaacagg 745

                                                                       
Query: 65  aagaacagaattcccatggtatgacttcaacctcttcccctaagggagacaaccacgagc 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aagaacataattcccatggtatgacttcaacctcttcccctaagggagacaaccacgagc 685

                                                                       
Query: 125 tattatgtaatggtcagactaggctgcgtagaacgaccttgtctcaaaaactgaaacagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tattatgtaatggtcagactaggctgcgtagaacgaccttgtctcaaaaactgaaacagc 625

                                                                       
Query: 185 caaataaagaaaagaataccctacagttttctgagacaccgagtttgctggcctgcatct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caaataaagaaaagaataccctacagttttctgagacaccgagtttgctggcctgcatct 565

                                                                       
Query: 245 catttgctaccctcatcctctgttagaaaatacatgctggagtttcttgtgttggtttac 304
           ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 564 catttgctaccctcatcctctgtcagaaagtacatgctggagtttcttgtgttggtttac 505

                                                                       
Query: 305 aggcaattccaccaggcttctcccagggacctgggacctagctatggcttaagtcattac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aggcaattccaccaggcttctcccagggacctgggacctagctatggcttaagtcattac 445

                                                                       
Query: 365 ctgccaccacccgcatgcaggcatagaaaaggactgcttgccaccccagctggctctctc 424
           |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgccaccaggtgcatgcaggcatagaaaaggactgcttgccaccccagctggctctctc 385

                                                                       
Query: 425 tctgttcccatgtattcctggctggactctttctccccttttctgtccttctctgtgccc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctgttcccatgtattcctggctggactctttctccccttttctgtccttctctgtgccc 325

                                                                       
Query: 485 ccttctctgcctcaaggctctgctcctgtctgtttgcctctaccccttcttaagctgctt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccttctctgcctcaaggctctgctcctgtctgtttgcctctaccccttcttaagctgctt 265

                                                                       
Query: 545 actcctctccgttctcccacataatcttcctttattcccccttctctgctgcattgtgtg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actcctctccgttctcccacataatcttcctttattcccccttctctgctgcattgtgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no148_i02.g1 MSMg01no148_i02.g1 CHROMAT_FILE:
MSMg01no148_i02.g1 PHD_FILE: MSMg01no148_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:25 2005
         (513 letters)



>mm_chr4_116375929_116376841
          Length = 913

 Score =  953 bits (493), Expect = 0.0
 Identities = 508/513 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaggtttagtaagcaaggaaagaggaagctcagatgtagtgctagggtgttctgagggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaggtttagtaagcaaggaaagaggaagctcagatgtagtgctagggtgttctgagggt 260

                                                                       
Query: 61  tgggctaagcctaatagggccaagcgttgggcaggtggggtggaaaagtagatcttctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggctaagcctaatagggccaagcgttgggcaggtggggtggaaaagtagatcttctgt 320

                                                                       
Query: 121 tcttcggagtaccgttcttcaggagtcacagcatcacggtaagtccagtcccgccaatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttcggagtaccgttcttcaggagtcacagcatcacggtaagtccagtcccgccaatgg 380

                                                                       
Query: 181 aaattgaaaccttcaagcagagtgatgcggccagctcttgtaggcacacagtcagggggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaattgaaaccttcaagcagagtgatgcggccagctcttgtaggcacacagtcagggggc 440

                                                                       
Query: 241 tttctgggtggtaaatttggcacttcaatccctggcagcaacattacccctcggatggca 300
           ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 tttctgggtggcaaatttggcacttcaatccctggcagcaacataacccctcggatggca 500

                                                                       
Query: 301 aaccagcccccaaatcgggggtgtatgcacacacctgctatgtgctgcccagaggacaaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 501 aaccagcccccaaatcgggggtgtatgcacacacctgctatgtgctggggagaggacaaa 560

                                                                       
Query: 361 gaaaaagcagggttacagaggtcattttgacactaggttcaacgactattggaaactttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaaaagcagggttacagaggtcattttgacactaggttcaacgactattggaaactttt 620

                                                                       
Query: 421 tatcccccaagtatgggtatgagtgttttgcttgcatgcaagcagtacccacagcggcca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatcccccaagtatgggtatgagtgttttgcttgcatgcaagcagtacccacagcggcca 680

                                            
Query: 481 gcagagggtgtcaatctaaaaacgagttgcaga 513
           |||||||||||||||||||||||||||||||||
Sbjct: 681 gcagagggtgtcaatctaaaaacgagttgcaga 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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