BAC Information

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BAC

Clone NameMSMg01-148I18
Chromosome4 (Build37)
Map Location 138,079,550 - 138,222,756
singlet/doubletdoublet
Overlap gene4931403E03Rik
Upstream geneHspg2, Ldlrad2, Usp48, Rap1gap, Akp2, Ece1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618
Downstream geneUbxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148I18.T7 (MSMg01no148_i18.b1)MSMg01-148I18.TJ (MSMg01no148_i18.g1)
ACCAG351508AG351509
length751733
length of high quality
(start - end)
209 (65 - 273)504 (80 - 583)
definitionCHROMAT_FILE: MSMg01no148_i18.b1 PHD_FILE: MSMg01no148_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:29 2005CHROMAT_FILE: MSMg01no148_i18.g1 PHD_FILE: MSMg01no148_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,222,551 - 138,222,756)(138,079,550 - 138,080,053)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGACTCCGCGGAATTCTCA
CCTATGTTCCGCACTCACAGAACGCTGTACCCCTCCCCCTTACTTCTGAG
TCCCGCAAGGCCAGGTTCTGTGGCTGCCAAGGCTGACATCCATCTTCCTG
CCTGCTCGGATGATGTCCTTTCTTGTCCTCTAAACAGCTGGCCAAGGATG
AGTCACTTCCCCAGGAGAGGCATATCTTACAGAGGGGAAGGAGAGGCGCA
TGGGGGTAGGGTGGGGGTGGCAATTTCCTCTATACTTCCTCGTCACTTTC
TCTCAACACCCACCCTTTTTTTTCTTTGACTACCGCCCAATTTCACCCCA
TCTGTTGTGATCGCCACGCCCCCGAAGTCGTTACTGTCTCGCAGTAGTAG
ATCCGAGCTCCCCCCCCTCCCCGATTATAGATATCTTACTGCGCTTCCTA
AAATTTATGCCCCTACCAATTGCTTCACCCCCTACATCGCTTTTAATAAC
TTCTATCGCCTTTCGCCTCTAGTCCCACTGCACCCTCTTCTTTTTATACG
CCTCGGCTATTTCGTCTTCTCCTATCTCATATTTTCATTATCCTACATTG
TTGTCTCCCTACTATTCTCCTTTATTGCCTTTGTTTATTTTTCCTTACCG
CCCGTTTTGCCAGCTCCCCCCCACTTTTACCGTTTTTACACTACCCCCCT
CCAGCCTACAATAATCAACCTTTTTCCCTCTCTGCATTTTTCTTATTTTT
A
NCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTGGTAGAGCTGTGTAGC
CCTAGGCTCGTGACATAACCTCTCTGAACTTTGGCTTCCTCATATGCAAT
ACCAGGGAGATGGATCTTAGTGGCCTGGGGTAGCCATGAAGAGTATGAGG
ACAGTCACAAACCACAGAGTGGGCTCTGTGCTGTGCTGAAGGCAGGCAGG
GGGCCTGAGAGGCGGGCATCCCGAGCCTCAGCACTGTGGAGAGGATGACA
GTTCTGCCTTCATATCCTGAAGCAGCCTCACACTGCAGGAGGAGCTGAGA
GGCCTCTGGTGTTTGGTTGCCTGGTTTCTGCTGAGTCGGAAGGAGCTGGG
AGCTGGGAAGTGACACCCCCCCCCAGCCAGGGGCCGTGTGGGACACATTC
TTTGCTGAAAGCCAGTTTCCATCTTGTTATCTTAATGGCTCCTTACAACA
GCTCTGGTAATTGTCAGCTCGCTGTTCAGATAGATGGGAGCCCCGAGACT
GAGTTAACTGCTCAAGGTCACTCAGCATAGCAGCTTTGACAGGGAGGCCT
AGTCAGACATCAGGCCAAGTGTCTGTGTCTCTAACAGATGGTGATAAGCC
TTCCCAGAATCTGCCCACCTTTGTCTACCTTAACTTCTGCCTGCTGCAGT
CTCAGTCTCTTGTTCTCGAAGAGCTCTGACTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_i18.b1 MSMg01no148_i18.b1 CHROMAT_FILE:
MSMg01no148_i18.b1 PHD_FILE: MSMg01no148_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:29 2005
         (209 letters)



>mm_chr4_138222351_138222959
          Length = 609

 Score =  398 bits (206), Expect = e-116
 Identities = 206/206 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacagaacgctgtacccctcccccttacttctgagtcccgcaaggccaggttctgtggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tcacagaacgctgtacccctcccccttacttctgagtcccgcaaggccaggttctgtggc 347

                                                                       
Query: 61  tgccaaggctgacatccatcttcctgcctgctcggatgatgtcctttcttgtcctctaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tgccaaggctgacatccatcttcctgcctgctcggatgatgtcctttcttgtcctctaaa 287

                                                                       
Query: 121 cagctggccaaggatgagtcacttccccaggagaggcatatcttacagaggggaaggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cagctggccaaggatgagtcacttccccaggagaggcatatcttacagaggggaaggaga 227

                                     
Query: 181 ggcgcatgggggtagggtgggggtgg 206
           ||||||||||||||||||||||||||
Sbjct: 226 ggcgcatgggggtagggtgggggtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no148_i18.g1 MSMg01no148_i18.g1 CHROMAT_FILE:
MSMg01no148_i18.g1 PHD_FILE: MSMg01no148_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:29 2005
         (504 letters)



>mm_chr4_138079350_138080253
          Length = 904

 Score =  928 bits (480), Expect = 0.0
 Identities = 498/504 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccttggtagagctgtgtagccctaggctcgtgacataacctctctgaactttggcttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccttggtagagctgtgtagccctaggctcgtgacataacctctctgaactttggcttcc 260

                                                                       
Query: 61  tcatatgcaataccagggagatggatcttagtggcctggggtagccatgaagagtatgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatatgcaataccagggagatggatcttagtggcctggggtagccatgaagagtatgag 320

                                                                       
Query: 121 gacagtcacaaaccacagagtgggctctgtgctgtgctgaaggcaggcagggggcctgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacagtcacaaaccacagagtgggctctgtgctgtgctgaaggcaggcagggggcctgag 380

                                                                       
Query: 181 aggcgggcatcccgagcctcagcactgtggagaggatgacagttctgccttcatatcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcgggcatcccgagcctcagcactgtggagaggatgacagttctgccttcatatcctg 440

                                                                       
Query: 241 aagcagcctcacactgcaggaggagctgagaggcctctggtgtttggttgcctggtttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcagcctcacactgcaggaggagctgagaggcctctggtgtttggttgcctggtttct 500

                                                                       
Query: 301 gctgagtcggaaggagctgggagctgggaagtgacacccccccccagccaggggccgtgt 360
           ||||||||||||||||||||||||||||||||||||  |  |  ||||||||||||||||
Sbjct: 501 gctgagtcggaaggagctgggagctgggaagtgacagtctgcggcagccaggggccgtgt 560

                                                                       
Query: 361 gggacacattctttgctgaaagccagtttccatcttgttatcttaatggctccttacaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggacacattctttgctgaaagccagtttccatcttgttatcttaatggctccttacaac 620

                                                                       
Query: 421 agctctggtaattgtcagctcgctgttcagatagatgggagccccgagactgagttaact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agctctggtaattgtcagctcgctgttcagatagatgggagccccgagactgagttaact 680

                                   
Query: 481 gctcaaggtcactcagcatagcag 504
           ||||||||||||||||||||||||
Sbjct: 681 gctcaaggtcactcagcatagcag 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)