XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATCACTATAACCATAACTTTGCGATTATGTACCAAACCTCTGTCTCC
TGCAGTGGGTATTTTAATAAGGGTGGAGTGCATCTCAAACTGATATCACA
TTGCAAACAGAACATATTGCCAAACCTTAAAAACACACTAAGCACAGGGC
TTTTCCTCTTAATGGAATTTTATATTTTTTTGAGTTGTTACTCTTAGATT
TACTGGGTATTTTTATTTGCTTTATAAATATATGTTTGGTAAAGCATAAT
AGACTGATTATCCTGCTAGATTTAGGTAATTCTTTGAACATATGTCGTTA
GACACAGAAGGATAATAAAGTTATATTAAACAGGGTTTTAAAACTGTGAA
ATACACATCACTATAAAGCTTATCAGTTCTCTTTTATGTTCTGAATTTGG
AAGACATATTTCACAATCATAAATAAATGTGGGTATTAAGATTTGAGAAG
GCAAGGCTTACTCTGGTTTAGAATATCTCTCTGGAGCCAGATACAGTTTT
GATAAAATCCAGAACTTACAGGGTAGATATGTTATATAAATAAAACTGTT
TCTCCCCCACAAGGACTTTGGCTCCAGCTCTGATATCAGACCTGTGATCG
TTCACGCTGGTTCTCACCACTGGACACCACACCAGGGATGTAGTTTCAAG
TAAATGAACAACGGTAGN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCATCTCTCCAATACTTTTAACATGAA
GGGGTGTTGCATTTTGTCAAATGCTTTTTCAGCATCTAAGGAGATGCTCA
TATGATTTTTTTCTTTGAGTTTGTTTATATAGTGAATTACATTAGTGGAT
TTTCATATACTAAACCAACCTTGCATCCCTGGAATGAAACCTACTTGATC
ATGGTGAATGATGGTTTTGATATGTTCTTGTATTCAGTTTGCAATTTTTT
TGTATTTTTTGTATCGCTATTCATAAACAAGATTGGTCTGAAGATCTTTA
TTTTGGTCGGGTCCTTGTGTAGTTTAGGTATCAGAGTAATTGTGGCTTCA
TAGAATGAGTTAGGCACCGTTCCTTCTGTTTCTGTTTTATGGAATAGTTT
GAGGAAAATTGGTGTCAGGTCTTCTTTGAAGGTCTGGTAGAATTCTGCAC
TAAATCCATCTGGTCTTGGGATTTTTTTTTGGTTGGGAGGTTTTTAATGA
CTTCTTCTATTTCCTTACTTGATATGGTCCTGCTTAGATAGTTTACCAAG
CAGTATTGTTTTAAATGTGTAAAATTTGAGTCATATATTTATGGAAAAAT
GAAGCTTGCTGAAAAATAATGTGAGGTAACAGGTTGCTGAAGGCAATGCT
GGTTCCACCTGAN

Query= MSMg01no148_o19.b1 MSMg01no148_o19.b1 CHROMAT_FILE:
MSMg01no148_o19.b1 PHD_FILE: MSMg01no148_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:59 2005
         (672 letters)



>mm_chr4_85594733_85595803
          Length = 1071

 Score = 1251 bits (647), Expect = 0.0
 Identities = 663/671 (98%), Gaps = 7/671 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatcact---ataaccataactttgcgattatgtaccaaacctctgtctcctgc 61
           |||||||||||||   ||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatcactggaataa---taactttgcgattatgtaccaaacctctgtctcctgc 261

                                                                       
Query: 62  agtgggtattttaataagggtggagtgcatctcaaactgatatcacattgcaaacagaac 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agtgggtattttaataagggtggagtgcatctcaaactgatatcacattgcaaacagaac 321

                                                                       
Query: 122 atattgccaaaccttaaaaacacactaagcacagggcttttcctcttaatggaattttat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atattgccaaaccttaaaaacacactaagcacagggcttttcctcttaatggaattttat 381

                                                                       
Query: 182 atttttttgagttgttactcttagatttactgggtatttttatttgctttataaatatat 241
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atttttt-gagttgttactcttagatttactgggtatttttatttgctttataaatatat 440

                                                                       
Query: 242 gtttggtaaagcataatagactgattatcctgctagatttaggtaattctttgaacatat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttggtaaagcataatagactgattatcctgctagatttaggtaattctttgaacatat 500

                                                                       
Query: 302 gtcgttagacacagaaggataataaagttatattaaacagggttttaaaactgtgaaata 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcgttagacacagaaggataataaagttatattaaacagggttttaaaactgtgaaata 560

                                                                       
Query: 362 cacatcactataaagcttatcagttctcttttatgttctgaatttggaagacatatttca 421
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacatcactataaagtttatcagttctcttttatgttctgaatttggaagacatatttca 620

                                                                       
Query: 422 caatcataaataaatgtgggtattaagatttgagaaggcaaggcttactctggtttagaa 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caatcataaataaatgtgggtattaagatttgagaaggcaaggcttactctggtttagaa 680

                                                                       
Query: 482 tatctctctggagccagatacagttttgataaaatccagaacttacagggtagatatgtt 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatctctctggagccagatacagttttgataaaatccagaacttacagggtagatatgtt 740

                                                                       
Query: 542 atataaataaaactgtttctcccccacaaggactttggctccagctctgatatcagacct 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atataaataaaactgtttctcccccacaaggactttggctccagctctgatatcagacct 800

                                                                       
Query: 602 gtgatcgttcacgctggttctcaccactggacaccacaccagggatgtagtttcaagtaa 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtgatcgttcacgctggttctcaccactggacaccacaccagggatgtagtttcaagtaa 860

                      
Query: 662 atgaacaacgg 672
           |||||||||||
Sbjct: 861 atgaacaacgg 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1071
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1061
Effective search space:   702382
Effective search space used:   702382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)