Query= MSMg01no149_d18.b1 MSMg01no149_d18.b1 CHROMAT_FILE:
MSMg01no149_d18.b1 PHD_FILE: MSMg01no149_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:26 2005
(542 letters)
>mm_chr4_71912901_71913837
Length = 937
Score = 944 bits (488), Expect = 0.0
Identities = 527/542 (97%), Gaps = 5/542 (0%)
Strand = Plus / Plus
Query: 1 gaaaaagctacattgtcactttggccatgatagtgaaaataagccacagggttaatgtag 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 gaaaaagccacattgtcactttggccatgatagtgaaaataagccacagggttaatgcag 260
Query: 61 aggcagagttagaagtacgtatgtatcaggaggtccatagtgttttctttggattaaaga 120
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 aggcagagttagaagtacttatgtatcaggaggtccatagtattttctttggattaaaga 320
Query: 121 attaatgtgttctcagggaaaaacccctagtgtaatctgactgatccagaaatgtattta 180
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttaatgtgttctcagggaaaaa-ccctagtgtaatctgactgatccagaaatgtattta 379
Query: 181 gtcatctagataaaccacatatttctaaagaaaagaaacaaacaatgaatcaacaaaacc 240
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 380 gtcatctagataaaccacatatttctaaagaaaag----aaacaatgaatcaacaaaacc 435
Query: 241 acatagtctcgtggagagtctggtggctctccagacatgctactttccaaagaagcctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 acatagtctcgtggagagtctggtggctctccagacatgctactttccaaagaagcctca 495
Query: 301 aagatccaggctgcttgtcattggaaaaccatcttagaattgtgacttcttgcttgcagg 360
||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aagatacaggctgtttgtcgttggaaaaccatcttagaattgtgacttcttgcttgcagg 555
Query: 361 tgatgccaaaggagagagaacagagaattcatagctcttagctgcactttatccagggct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgatgccaaaggagagagaacagagaattcatagctcttagctgcactttatccagggct 615
Query: 421 aatcatagtctccagttatagatctaagcaaactgggaaagtttggggaccatatggcta 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 616 aatcatagtctccagttatagatctaagcaaactgggaaagtttgaggaccatatggcta 675
Query: 481 cccagtgatcagtaaatatttctctaaagttatgtgcaattcttgactgccactatgatt 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tccagtgatcagtaaatatttctctaaagttatgtgcaattcttgactgccactatgatt 735
Query: 541 tg 542
||
Sbjct: 736 tg 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 937
Length adjustment: 10
Effective length of query: 532
Effective length of database: 927
Effective search space: 493164
Effective search space used: 493164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_d18.g1 MSMg01no149_d18.g1 CHROMAT_FILE:
MSMg01no149_d18.g1 PHD_FILE: MSMg01no149_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:26 2005
(436 letters)
>mm_chr4_72045441_72046276
Length = 836
Score = 804 bits (416), Expect = 0.0
Identities = 431/436 (98%)
Strand = Plus / Minus
Query: 1 catcgcgcaacacagcctctttgtatcttcaaaatggtgtgactggccctaggtcagcca 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 636 catcgcgcaacacagcctctttgtatcttcaaaatggtgtgactggccccaggccagcca 577
Query: 61 cgttcaaagtttcgctatttgtgtcatctgggccccagtactgatggaggctttgattac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cgttcaaagtttcgctatttgtgtcatctgggccccagtactgatggaggctttgattac 517
Query: 121 agcttggacctagctgtaagacccttcaggggcagccactcagcaaataaaggcattgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 agcttggacctagctgtaagacccttcaggggcagccactcagcaaataaaggcattgat 457
Query: 181 tggttgttgtgtcaatttagccataagggtgcagggcatggttcttttgaaaagcctaat 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tggttgttgggtcaatttagccataagggtgcagggcatggttcttttgaaaagcctaat 397
Query: 241 ggattatcaacacaaccagccccagtgaaggccttatttttcaagtaacttcatgatggt 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ggattagcaacacaaccagccccagtgaaggccttatttttcaagtaacttcatgatggt 337
Query: 301 gtcccagcttggcacagatctcttcccccagagcagctctggggcctttcttcttgtcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gtcccagcttggcacagatctcttcccccagagcagctctggggcctttcttcttgtcaa 277
Query: 361 tactggggctcaaaggattagactcagcaggttttacaatttaatgaaaacagctgttga 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 276 tactggggctcaaaggattagacacagcaggttttacaatttaatgaaaacagctgttga 217
Query: 421 aacaacaattaaggca 436
||||||||||||||||
Sbjct: 216 aacaacaattaaggca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space: 353129
Effective search space used: 353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
