BAC Information

Click to search

BAC

Clone NameMSMg01-149J15
Chromosome4 (Build37)
Map Location 132,567,100 - 132,567,263
singlet/doubletsinglet
Overlap genenone
Upstream geneEpb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr
Downstream geneAhdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149J15.T7 (MSMg01no149_j15.b1)MSMg01-149J15.TJ (MSMg01no149_j15.g1)
ACCAG352272AG352273
length690691
length of high quality
(start - end)
539 (42 - 580)164 (370 - 533)
definitionCHROMAT_FILE: MSMg01no149_j15.b1 PHD_FILE: MSMg01no149_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:56 2005CHROMAT_FILE: MSMg01no149_j15.g1 PHD_FILE: MSMg01no149_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATAATTTGCGGCGCTATACGACTCCTATTCCAAGAGGATCCGCGGAA
TTCTTGCCTGCCACCCGGGAGGCCCAGGTTCAATTCCTGGCCAATGTACA
GCTTTCTCAAGTTGTCAGAAAAGAGTGAATAAAGAACTAAAATTGCATGT
GGGGCTGGAGAGATGGCTCAGTGGTTACGAGCACTGAGGTCTGGAATCCA
ATTCCCAGCCACCACATGGTGGCTCACAATCATCTGTAATGGGATCTGAT
GCCATCTTCTGGTGTGTCTAAAGTCAGCGACAGTGTGCCCACATACAAGA
GATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATCTTTTTT
AAAAATTCCATGCGATTTATTCAGTCTGTTTGGGCAGCATGCCTCAGAGG
ACTTGAGTGGAGGGCACAGAACAGCCTGAGGTGGTCAGTTCTTTGTCTCC
ATCATGTGGGTCTCATATAACCCAGGCTTTCCCTGAAACTGGGTCTATAA
CCTAAAGACGACCATGAGTCTCTGAACCTTCCGCTTCTGTCTCCCAAGTG
CAGGGGTTGAAGGTGGGCACCATCATGTCTAGTTCATGTGTTGTTGGAGA
TTGAACCTAGGGCTCTCCTAGGCAAGGGCTCTGCTCCTTGGGGTACTTCC
TTACCCCATTTCTTTTTTTGGTTTTTCGAGACAGAGTTTC
ACGATGCAGTGGGAGGCCTGGCGGCCGCCTGTTCTCACCTGGGGGTGACC
TATAGAAGTACCAAAAAAATTCCGCTCACAACAATTGTTCAAATTCAGGA
GAAGGCATGGTATCTACACTTTGTCCAGAATTTTTTGCGCCCTCGCCGCC
CGTGGACGACAATAAAAAGTAGGCGCTGGAAGAACTAAATCCAGGGCTGA
GTTTGAGGCGAAGGGCCACGAAATGCGGAGGAGACTGTGGCGTTTCCAGA
GCGGCTTTCTTGCCAAACGCCTCTTCTGATAGGAAAAACGTCCCCAAATT
GAAAGTGTAGGTCCTCTCGTTTCTCTCATGGGCCCTCTCAACGTGTTTGG
GACACCCCAGAAAGTCGCAGCCCTTTTGGCTCATCCTCTGATGCCCGATT
CCACTCATTTTATTCTCAGACCCCGCCCCTGCGCTACCACCCGCAACCTT
GGCGCAGCCAGAGCCCCGAGTAGGGGCCTCGGAACGCCCGGAATGTTCCT
AACCCTTGAGGAGGATCAGCAGTCCTAGATAAAACGGGATTCATCCGGGC
CGGGGATACTCCGGCATAGGGTCCACTCCGGGCCGCGCCGTCGGAGCAGC
CGGAGTGTGCCCGCCCGCACAGCGCGCGGAGCGGCCGAACGTGGACTACA
AGTCCCGGTTGTGTTTTGCGCGCGCTCCCCCCCTGGGTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_j15.g1 MSMg01no149_j15.g1 CHROMAT_FILE:
MSMg01no149_j15.g1 PHD_FILE: MSMg01no149_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:56 2005
         (164 letters)



>mm_chr4_132566900_132567463
          Length = 564

 Score =  317 bits (164), Expect = 2e-91
 Identities = 164/164 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcccttttggctcatcctctgatgcccgattccactcattttattctcagaccccgcccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcccttttggctcatcctctgatgcccgattccactcattttattctcagaccccgcccc 260

                                                                       
Query: 61  tgcgctaccacccgcaaccttggcgcagccagagccccgagtaggggcctcggaacgccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcgctaccacccgcaaccttggcgcagccagagccccgagtaggggcctcggaacgccc 320

                                                       
Query: 121 ggaatgttcctaacccttgaggaggatcagcagtcctagataaa 164
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaatgttcctaacccttgaggaggatcagcagtcctagataaa 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)