Query= MSMg01no149_m16.b1 MSMg01no149_m16.b1 CHROMAT_FILE:
MSMg01no149_m16.b1 PHD_FILE: MSMg01no149_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:10 2005
(548 letters)
>mm_chr4_91835396_91836343
Length = 948
Score = 924 bits (478), Expect = 0.0
Identities = 525/544 (96%), Gaps = 8/544 (1%)
Strand = Plus / Minus
Query: 5 gaattcc-tagttttgccatccttaatgac-taataaagataaacttaaatattataaga 62
||||||| |||||||| ||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 841 gaattccatagttttgtcatccttaatgacataataaggataaacttaaatattataaga 782
Query: 63 acaccaagtggatttcttttttttttttttttttttttgggccaagccttgatacccact 122
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 781 acaccaagtggatttc------ttttttttttttttttggtccaagccttgatacccact 728
Query: 123 ctcaccataaactactattgaaaaagttaacaaatggcatgatttctgtttctattagca 182
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 727 ctcaccataaactactattgaaaaagttaacaaatggcatgatttctgtctctattagca 668
Query: 183 gttattcctggaaaatattgcatataaaacaacccgaaattattggtacaatctctgaaa 242
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 667 gttattcctggaaaatattgcatataaaacaactcgaaattattggtgcaatctctgaaa 608
Query: 243 tatacaaaattaagtcccatctattatagtcagacagttatttcaaaccagttattttta 302
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 607 tatacaaaattaagtcccatctattatagtcagatagttatttctaaccagttattttta 548
Query: 303 acatgttatgtaacttaaagattggtaaatactaattagtaattcaccaaagaggagatt 362
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 547 acatgttatgtaacttaaagattggtaaatactaagtagtaattcaccaaagaggagatt 488
Query: 363 catttaaatataaatgccattcctcaatgtgaacttactgtaaatttttgtgttaaagat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 catttaaatataaatgccattcctcaatgtgaacttactgtaaatttttgtgttaaagat 428
Query: 423 tttttcttttaagcagactaattgaaagttggaaacaaaaatatcaaagttattacaaag 482
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 427 tttttcttttaagcagactaattgaaagttggaaacaaaaatatcaaatttattacaaag 368
Query: 483 atacccttatttcttcaatataattcacacaagaggtagctgaaatctagtaagctattt 542
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 367 atacccttatttcttcaatataattcacacaagaggtagctgaaatctaataagctattt 308
Query: 543 tgca 546
||||
Sbjct: 307 tgca 304
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_m16.g1 MSMg01no149_m16.g1 CHROMAT_FILE:
MSMg01no149_m16.g1 PHD_FILE: MSMg01no149_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:11 2005
(612 letters)
>mm_chr4_91772771_91773782
Length = 1012
Score = 1081 bits (559), Expect = 0.0
Identities = 601/619 (97%), Gaps = 9/619 (1%)
Strand = Plus / Plus
Query: 1 cgggttgtctccttggcttttcttcaattgttctccttgctttctccttgctgggactca 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 196 cgggttgtctccttggcttttcttgaattgttctccttgctttctccttgctgggactca 255
Query: 61 cctgcatctgggtagttaacattcttgtgggtcaaacatttttttttctatttgctactg 120
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 256 cctgcatctgggtagttaacattcttgtgggtcaagca-ttttttttctattttctactg 314
Query: 121 cttcttctaagtaggacaacagtaattatttccatagcttctctgtctataagtgttact 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cttcttctaagtaggacagcagtaattatttccatagcttctctgtctataagtgttact 374
Query: 181 cttggttttatttatatagaagtttctcttacctttgagattgagagcttggcatttcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttggttttatttatatagaagtttctcttacctttgagattgagagcttggcatttcaa 434
Query: 241 tgtctttggctgtagtctttttttttttt-------aggttaaaaatatttattacaagc 293
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 435 tgtctttggctgtagtcttttttttttttttttttaaggttaaaaatatttattacaagc 494
Query: 294 agattccccttcccccatattaaaaaggaactaaggcctggttagatccatttctaaatc 353
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 agattcccctttccccatattaaaaaggaactaaggcctggttagatccatttctaaatc 554
Query: 354 cattatccaataaagtaccacactaagggaaagagactgagaaagttaacactgggaaaa 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cattatccaataaagtaccacactaagggaaagagactgagaaagttaacactgggaaaa 614
Query: 414 aacagaaaccaaaaaaagtcaaattgatccttaacactttcgttttttaattaagcacat 473
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 615 aacagaaatcaaaaaaagtcaaattgatccttaacacttta-ttttttaattaagcacat 673
Query: 474 aaaaccatactactttacatatttctccatgaacattttgtgaaattcagatcacagtgt 533
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 674 aaaaccatactactttacatatttctccatgaacattttgtgaaattcagatcgcagtgt 733
Query: 534 attgtttacaaatcgtttgtctttcttctggtcatctataccttttgcacagttcttaaa 593
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 734 attgtttacaaatcgtttgtctttcttctggtcatctatactttttgcacagttcttaaa 793
Query: 594 aaacgacatcatggcccca 612
|||||||||||||||||||
Sbjct: 794 aaacgacatcatggcccca 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
