BAC Information

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BAC

Clone NameMSMg01-149O08
Chromosome4 (Build37)
Map Location 124,575,813 - 124,726,564
singlet/doubletdoublet
Overlap geneCdca8, 9930104L06Rik, Rspo1, Gnl2
Upstream geneMycbp, Rragc, 1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10
Downstream geneDnali1, Snip1, 2310005N01Rik, Zc3h12a, LOC100039298, Grik3, Ftl2, Csf3r, Mrps15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149O08.T7 (MSMg01no149_o08.b1)MSMg01-149O08.TJ (MSMg01no149_o08.g1)
ACCAG352486AG352487
length704690
length of high quality
(start - end)		487 (48 - 534)337 (79 - 415)
definitionCHROMAT_FILE: MSMg01no149_o08.b1 PHD_FILE: MSMg01no149_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:18 2005CHROMAT_FILE: MSMg01no149_o08.g1 PHD_FILE: MSMg01no149_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,575,813 - 124,576,295)(124,726,237 - 124,726,564)
sequence
CATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGC
GGAATTCAGCCTGCTGCCGACAGGGGAGAGAGAGTACGCTCAGCAGCTGT
GCAGTGGAGCGACAGGCTGCTATTGTCCGGCTCACAAAGACATTGCTTTT
TTCAAAGGGTCAGGCACTGGGGGAAAGACTAAAGGATTTTTTTAAAGTTA
TTTTTAGGATGGGAGACAGTACCGCTCAGTTGGTAGTGTAGCCTAGGGTT
CACTACAGCCACATGGGTCTGTCTAGTCCCACTGGCTTTACAGAGGTTAA
AAATACGACACTCCCTCCCTGTCCCCTATACCAGCAATCAGCTGTCAACT
GTGAGTTTTGGCTCCAGTGATGTCCATCGGCATCATTGGAATTTAAATTG
GGCCTACTGGGCATATACCACATGAGACCGGAAGCCATATCCAAGCCCTT
GTCAAAGGGCAGGGTATATGTGTGCCATCTCCACCTCTGCCCTTTGCTAT
CTGATGTCTATTAGTTTCTGACTCCCCGGCGTCCCAGAATCTGATGCTGC
TTTTTGCACTATTTTCAGGGCCTCTTGCCTGTGCAGGACACTGCTGGGTC
CCCAGCCGCTTCCGGTTGGCGAACTTGATCAAGCCCTTTGACTGGGTCCG
AGTCTCATCCCAAGGCCTTTCTATTCCATTTCTCCATGCTGTGAGACTGG
TTTT

NCTTCCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAAAAGGACCTAGAAACAGGA
AAGCCATGTGTAAAGACTGAGACTTTGGCCAAGCCACCAAGGGTAAAAGC
TATGGGGCAGTAGGCAGCTTCCTGTCTGTGTCCCAGCTCAGTCCCTAAGC
CCAACACCTCCTGACCAGAATGTTATCAACTCCGCTCTGCCTGTGAGCTC
CCAGTTCTCTTTAGAGCAAGGGCTCCTATTTACCCATCTGTTCTCTGTGG
CTGTGGTTGGTCTGAAAAAAGGTTTCTTCATGAATGAACTTTGGCAACAC
CTCTGCTCCCACAGAAGACAGAAATTTAACAAATATTAATTTCTTCTCCT
CCTCCTCCTCCTTGCCCCACAGCTGGTACCTACTCTCACAGTTCTGCCTT
ACTCTGCTCATTTGTCTCTAATGCTCTTCAGCAAGTCTATACAATGGATG
ACACACACGTACCAAAAATGAAGACATTCCACAAAGGAAACAACCTTTGA
GTTACACCATACTGGGGGTCACTTGAGCCCATTTTCCAGGACCTGTGCTC
ACCCTCTTCTTTACTTGGGAATCGTCCGGTATCTCTGCATTGGGCGGCTT
TGACAAAAAAGGGATTCTGCCTCCCTGCCAATCATTGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_o08.b1 MSMg01no149_o08.b1 CHROMAT_FILE:
MSMg01no149_o08.b1 PHD_FILE: MSMg01no149_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:18 2005
         (487 letters)



>mm_chr4_124575609_124576495
          Length = 887

 Score =  888 bits (459), Expect = 0.0
 Identities = 477/483 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcctgctgccgacaggggagagagagtacgctcagcagctgtgcagtggagcg 64
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcctgccggggacaggggagagagagtacgctcagcagctgtgcagtggagcg 264

                                                                       
Query: 65  acaggctgctattgtccggctcacaaagacattgcttttttcaaagggtcaggcactggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaggctgctattgtccggctcacaaagacattgcttttttcaaagggtcaggcactggg 324

                                                                       
Query: 125 ggaaagactaaaggatttttttaaagttatttttaggatgggagacagtaccgctcagtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggaaagactaaaggatttttttaaagttatttttaggatgggagacagtaccgctcagtt 384

                                                                       
Query: 185 ggtagtgtagcctagggttcactacagccacatgggtctgtctagtcccactggctttac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtagtgtagcctagggttcactacagccacatgggtctgtctagtcccactggctttac 444

                                                                       
Query: 245 agaggttaaaaatacgacactccctccctgtcccctataccagcaatcagctgtcaactg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaggttaaaaatacgacactccctccctgtcccctataccagcaatcagctgtcaactg 504

                                                                       
Query: 305 tgagttttggctccagtgatgtccatcggcatcattggaatttaaattgggcctactggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgagttttggctccagtgatgtccatcggcatcattggaatttaaattgggcctactggg 564

                                                                       
Query: 365 catataccacatgagaccggaagccatatccaagcccttgtcaaagggcagggtatatgt 424
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatataccacatgagaccggaagccatatccaagcccttgtcaaagggcagggtatatgt 624

                                                                       
Query: 425 gtgccatctccacctctgccctttgctatctgatgtctattagtttctgactccccggcg 484
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 625 gtgccatctccacctctgccctttgctatctgatgtctatttttttctgactccccggcg 684

              
Query: 485 tcc 487
           |||
Sbjct: 685 tcc 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no149_o08.g1 MSMg01no149_o08.g1 CHROMAT_FILE:
MSMg01no149_o08.g1 PHD_FILE: MSMg01no149_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:19 2005
         (337 letters)



>mm_chr4_124726037_124726773
          Length = 737

 Score =  634 bits (328), Expect = 0.0
 Identities = 328/328 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaaaaggacctagaaacaggaaagccatgtgtaaagactgagactttggccaagccacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tgaaaaggacctagaaacaggaaagccatgtgtaaagactgagactttggccaagccacc 469

                                                                       
Query: 61  aagggtaaaagctatggggcagtaggcagcttcctgtctgtgtcccagctcagtccctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 aagggtaaaagctatggggcagtaggcagcttcctgtctgtgtcccagctcagtccctaa 409

                                                                       
Query: 121 gcccaacacctcctgaccagaatgttatcaactccgctctgcctgtgagctcccagttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gcccaacacctcctgaccagaatgttatcaactccgctctgcctgtgagctcccagttct 349

                                                                       
Query: 181 ctttagagcaagggctcctatttacccatctgttctctgtggctgtggttggtctgaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctttagagcaagggctcctatttacccatctgttctctgtggctgtggttggtctgaaaa 289

                                                                       
Query: 241 aaggtttcttcatgaatgaactttggcaacacctctgctcccacagaagacagaaattta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aaggtttcttcatgaatgaactttggcaacacctctgctcccacagaagacagaaattta 229

                                       
Query: 301 acaaatattaatttcttctcctcctcct 328
           ||||||||||||||||||||||||||||
Sbjct: 228 acaaatattaatttcttctcctcctcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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