BAC Information

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BAC

Clone NameMSMg01-150A04
Chromosome4 (Build37)
Map Location 51,456,012 - 51,456,472
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040979, LOC666681, LOC100040814
Downstream geneLOC384015, LOC100041026, LOC100041038, LOC666724, Smc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150A04.T7 (MSMg01no150_a04.b1)MSMg01-150A04.TJ (MSMg01no150_a04.g1)
ACCAG352568AG352569
length735732
length of high quality
(start - end)
446 (115 - 560)524 (74 - 597)
definitionCHROMAT_FILE: MSMg01no150_a04.b1 PHD_FILE: MSMg01no150_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:27 2005CHROMAT_FILE: MSMg01no150_a04.g1 PHD_FILE: MSMg01no150_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAACACGCATCCG
CGGAATTCAAGGACTATACCTAAACAGTGCAAAAGCTATATAAAGCAAAC
CAGTAGACAATATCAATATAAATGGAGAGAAACTTGAAGCAATCCTATTA
AAATCAGGAACAAGTCACAGCTGTCCATTCTCTACTTATATTTACAATAA
AGTACTTGAAGTTCTAGCTAGAGCAATTAAACAACAAAGGGAGGTCAAAG
GGATACAATTGGAAAAGAAGTCAAAATATCACTATTTGCAGATAATATGG
TAGTATTCTTAAGTGACCCCAAATATTCCACCAGAGAATTCCTAAATCTG
ACAAACAACTTCAGCAATGTGGGTGGATATAAAATTATCTCAAACAAATC
AGTGGTCTTCCTTTACTCCCCCCATAAATTGGCTGAGAAACAAATTAGGG
AAAAGACATCTTTCACAATAGTCACAAACAATATAAAATGTCTTGGTGTT
ACTGTAACCAAGCAAGATCTGTATGACAATAACTTCAATTCTCTAAAGAA
AGAAATCAAAGAAGACCTCAGAAGATGGAAAGATCTGGTATGTGCATGGA
TTGGCAGGGTTAATATAGTAAAAAATTACCATCTTGCAGAAAGCCAATCT
ACAGAGTCAATGGAATCCCATCAAAATTCCCACTCCATTCTCCATACAGT
TAACAAAAGCAATTCTCACATTCCTTTTGAATAAC
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGACAGCTGGATTTTTTATTAAGTAC
CTCATCAGCTGACATTATCGCATCATAATATCTGAATTTTTTCTCGCTCG
CTCTGTGTGTGTGTGTATGTGTGTTTATGTGTTTGCCTGTGCATATATGT
GCACACATGTACACAGATATATGTGCACACATATGCACAGATATATGTGC
ACACATGTACACAGATATATGTGCATACATATGCACAGATATACGTGTGT
ATTTGTCTGAGGAGGCTTGAGGTCACCCCTCAGATTTCATTCTTGAAAAT
CCATGCTTGTTTTTGAAAGAATCTGAGATCTGGGCATTGCCAAAGTCTTG
GTTGAATGGCCATTAAATACCACGTACCTACCTCTTTTTTATTCCTCAGA
GATTTACTTATATACATCACTATATCTGCAGTCTTTAATTTTTTAAGTTA
CATTTTATTTAAAATGTACTTATTTAAGTGTGTCTTTCTATTTGCTCTCA
AATACATTGTCTTTCATTATTATTGCTTTATAATACATGCACACACATAG
ATTCACAGGTTTATAAATATAATCTTCCAAGTCTGTCTTTAATTTTTGTG
TACACATGTCTTTGGGGTTGACAATTTGTATTGCGAAACATTTAGGAAAC
TCATCCCTGGGAGGGGCTAATTTTCTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_a04.g1 MSMg01no150_a04.g1 CHROMAT_FILE:
MSMg01no150_a04.g1 PHD_FILE: MSMg01no150_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:28 2005
         (524 letters)



>mm_chr4_51455587_51456513
          Length = 927

 Score =  743 bits (384), Expect = 0.0
 Identities = 444/472 (94%), Gaps = 15/472 (3%)
 Strand = Plus / Minus

                                                                       
Query: 57  atctgaattttttctcgctcgctctgtgtgtgtgtgtatgtgtgtttatgtgtttgcctg 116
           |||| |||||||||||||||||||||||||||||||          ||||||||||||||
Sbjct: 886 atcttaattttttctcgctcgctctgtgtgtgtgtg----------tatgtgtttgcctg 837

                                                                       
Query: 117 tgcatatatgtgcacacatgtacacagatatatgtgcacacatatgcacagatatatgtg 176
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 tgcatatatgtgcacacatatacacagatatatgtgcacacatatgcacagatatatgtg 777

                                                                       
Query: 177 cacacatgtacacagatatatgtgcatacatatgcacagatatacgtgtgtatttgtctg 236
           |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 776 cacacatgtacacagatatatgtgcacacatatgcacagatatacttgtgtatttgtctg 717

                                                                       
Query: 237 aggaggcttgaggtcacccctcagatttcattcttgaaaatccatgcttgtttttgaaag 296
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 716 aggaggcttgaggtcacccctcagatttcattcttgaaaa-ccatgcttgttttttaaag 658

                                                                       
Query: 297 aatctgagatctgggcattgccaaagtcttggttgaatggccattaaataccacgtacct 356
           ||||||||| |||||||||||||||| |||||||||||||||||||||| ||| ||||||
Sbjct: 657 aatctgagacctgggcattgccaaagacttggttgaatggccattaaatcccaggtacct 598

                                                                       
Query: 357 acctcttttttattcctcagagatttacttatatacatcactatatctgcagtctttaat 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 acctcttttttattcctcagagatttacttatatacatcactatatctgcagtctttaat 538

                                                                       
Query: 417 ----tttttaagttacattttatttaaaatgtacttatttaagtgtgtctttctatttgc 472
               |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct: 537 tttctttttaagttacattttatttaaaatatacttatttaattgtgtctttctctttgc 478

                                                               
Query: 473 tctcaaatacattgtctttcattattattgctttataatacatgcacacaca 524
           |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 477 tctcaaatacattgtctttcattattattgttttataatacatgcacacaca 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 927
Length adjustment: 10
Effective length of query: 514
Effective length of database: 917
Effective search space:   471338
Effective search space used:   471338
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)