Query= MSMg01no150_c17.b1 MSMg01no150_c17.b1 CHROMAT_FILE:
MSMg01no150_c17.b1 PHD_FILE: MSMg01no150_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:39 2005
(646 letters)
>mm_chr4_50464039_50465081
Length = 1043
Score = 1029 bits (532), Expect = 0.0
Identities = 585/604 (96%), Gaps = 7/604 (1%)
Strand = Plus / Minus
Query: 7 gaattcctgtcaatcttcg-ctcattagaagaatgcatggacaaaatgatgtgatacaag 65
||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct: 794 gaattcctgtcaacctt-gactcattagaagaatgcatggacaaaatgatgtgataaaag 736
Query: 66 aaagggtggggtgagaacacaatagttacattcataaactgttatagacactctgtggtc 125
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aaatggtggggtgagaacccaatagttacattcataaactgttatagacactctgtggtc 676
Query: 126 tgcacaatgaaccccatgtatgtagacaatcatatttttcacaggacaatgaactgagtg 185
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 675 tgcacaatgaaccccatgtatgtagacaatcatatttatcacaggacaataaactgagtg 616
Query: 186 aactcagagggagtgtgcaactgtgggaaaggcaaagtaaggatatggaataaggtatat 245
|||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 615 aactcagaaggagtgtgcaactatgggaaaggcaaagtgaggatatggaataaggtatat 556
Query: 246 -acatgcattcctgccatatggactggtcttgagactttcacttgagagccaaaaaataa 304
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ga-atgcattcctgccatatggactggtcttgagactttcacttgagagccaaaaaataa 497
Query: 305 aaaaatgattgaaaaatttcaaaatttctacttgatgagattttaggtataaatactctc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaaaatgattgaaaaatttcaaaatttctacttgatgagattttaggtataaatactctc 437
Query: 365 cctctttccttttctctttagcttcttttcctgccttctcttcctgtactgatcctccct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cctctttccttttctctttagcttcttttcctgccttctcttcctgtactgatcctccct 377
Query: 425 ctatatctgcctctggaattcagttagtaacaggagaaacagaagacaatcattgctgat 484
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 376 ctatatctgcctctggaattcagtcagtaacaggagaaacagaagacaatcattgctgat 317
Query: 485 aaaggaggatggtgaacattctatgaaattaattctaggaatgacatttacaaaattaag 544
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aaagga---tggtgaacattctatgaaattaattctaggaatgacatttacaaaattaag 260
Query: 545 atttaaggtgggagaaaatgaaaacactggcttgaggaatagagaggggtgtgcatatat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 259 atttaaggtgggagaaaatgaaaacactggcttgaggaatagagaggggtgtggagatat 200
Query: 605 atat 608
||||
Sbjct: 199 atat 196
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1043
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1033
Effective search space: 656988
Effective search space used: 656988
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no150_c17.g1 MSMg01no150_c17.g1 CHROMAT_FILE:
MSMg01no150_c17.g1 PHD_FILE: MSMg01no150_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:39 2005
(244 letters)
>mm_chr4_50317159_50317802
Length = 644
Score = 472 bits (244), Expect = e-138
Identities = 244/244 (100%)
Strand = Plus / Plus
Query: 1 gaggccaaaaactactaaaagaataagtttggaaaatttactaatcgctggaatcaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaggccaaaaactactaaaagaataagtttggaaaatttactaatcgctggaatcaacaa 260
Query: 61 ctgccctgagagcatctgccaaaggtctgaagcttttagattttaataggtcctttgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgccctgagagcatctgccaaaggtctgaagcttttagattttaataggtcctttgaga 320
Query: 121 ggtagacttggcaatatccaaagttggctcaacatggggagtcaggaaaggtttccttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtagacttggcaatatccaaagttggctcaacatggggagtcaggaaaggtttccttca 380
Query: 181 tgaagcttttattctgagagataatgaatttggtgaaaaggtgagctagaaaaagcagcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaagcttttattctgagagataatgaatttggtgaaaaggtgagctagaaaaagcagcc 440
Query: 241 tcta 244
||||
Sbjct: 441 tcta 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
