BAC Information

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BAC

Clone NameMSMg01-150E14
Chromosome4 (Build37)
Map Location 7,462,226 - 7,462,588
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039414, Tox, LOC100039421, LOC666700
Downstream geneCar8, LOC100039494, LOC100039505, LOC100039478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150E14.T7 (MSMg01no150_e14.b1)MSMg01-150E14.TJ (MSMg01no150_e14.g1)
ACCAG352768AG352769
length769766
length of high quality
(start - end)
368 (43 - 410)239 (79 - 317)
definitionCHROMAT_FILE: MSMg01no150_e14.b1 PHD_FILE: MSMg01no150_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:48 2005CHROMAT_FILE: MSMg01no150_e14.g1 PHD_FILE: MSMg01no150_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTGTGTCCACTAAATTAGCTATATTTTAGTTGATGATTATAATTATA
ATTTTTTGGTCTTTGAAAATTATAATATTTTCAATTAAACAAGAAAGCAC
TCGACTTTTCCTGATTACAGTGTATCATTGATATCTCATACAATATTTCA
GTCTCATAAATAGGTCTTATAAATCCCTAAAAGGACACTACTTTGTCTCA
GAGTACAACGCAAGGAGGACATTTACTCTGCCAAACTACTTTTTCAACTA
TCTTACAAATAGTAACAATCAAAGCCCCTTTTAGTCCTAAAACAAACAAT
AAACTAGTCAAGCCCCTGTCTGCAGCTGTTCTTATGACACTTGAGTGGGT
AGAGAATGGTCGCCACGTTTTCCAGGGCCAAAAAGAGGGAGTGGGTGGGT
TGGGGACCAGGGTGGGGGGAGGGTACAGGTCCTTTTCCCCCTCGTCTCCT
CCCCTCTCTTTTCTTCCCCTTACCCCCTACTTCCCTCCCTTCTTTTCTTC
CTTTCTCCTTTATCCCCTTATTCTCCCCTCTCCTTTCCCCCCCCTTTCCC
CCCCTCTCCTCTCTCCCCCCCTCCTCTTTCCCTCTTTTTTACTTCCTTTC
TACCCCCCTTCACCACCCCTCTTCTCCCTCTCTTTTCTCCCCCCCCACTC
TTACTTCTCTTCCAATCCCTATTTTTTTTCCCCCCTTCTTCCATCTCTCT
CTCTTTTTCCCCCTCTTTT
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCAATTCTGGCGCTCTGGCCCCACTGGAGAGTTG
GCAGGCAGAGGTAGCCTGGTGGTATAGCGCCAGGCAGAAAGTAGCTGGAT
GGAGCCCAAGAACTTGGTGGCTCTACTTGGTTACTGGAGTGTGGGACTGC
GGACTACAGGGGTGTATTGCTGAGAAGGAACTAGTGACATCCGGGACAAG
CTAATCAGAGCTGGGAACACAGCAATTGATTGATCTGTAGCTGCAGGGGC
TAGCTAGAGACAGAAGCAGTGAATCGCACCAGAGTGGAGAGTTGCTGGCA
GTAGCGCGGGAAGAGAGCTGCTCCTTTTCAATATTTCCCACTACAAGGGT
ACCCATCGGACCACCCCCATATATAGAAAGAACATTCTTCTTGCATACTC
TGACAGGCCCAGAATAGTGGCATGCTTACATTTCCTGCCCCAGCGACCCC
AATCATGATTCCCACCCCGCCACATAGACCCCCGCTCGCTATTTACACCT
ATATAACCCGCCATCTTGCACACTTGCAGCCCCCCCTCTGCTAATTGTTT
GTTTTCCTATCTGCCCCCCCTTCCATTGGACCATTATGATCTTACCTCAG
TACCCCCCCAAGCCCCATCTTCTTTATCCGCCCATGCACCCACCAATAGG
CCCCACCTCCGTCTATCCCTGTGCCCATATAATGCCCCTCTGGTTTATGG
GATCCTCTTATCCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_e14.b1 MSMg01no150_e14.b1 CHROMAT_FILE:
MSMg01no150_e14.b1 PHD_FILE: MSMg01no150_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:48 2005
         (368 letters)



>mm_chr4_7462022_7462789
          Length = 768

 Score =  694 bits (359), Expect = 0.0
 Identities = 362/363 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgtgtccactaaattagctatattttagttgatgattataattataattttt 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgtgaccactaaattagctatattttagttgatgattataattataattttt 264

                                                                       
Query: 65  tggtctttgaaaattataatattttcaattaaacaagaaagcactcgacttttcctgatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggtctttgaaaattataatattttcaattaaacaagaaagcactcgacttttcctgatt 324

                                                                       
Query: 125 acagtgtatcattgatatctcatacaatatttcagtctcataaataggtcttataaatcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acagtgtatcattgatatctcatacaatatttcagtctcataaataggtcttataaatcc 384

                                                                       
Query: 185 ctaaaaggacactactttgtctcagagtacaacgcaaggaggacatttactctgccaaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctaaaaggacactactttgtctcagagtacaacgcaaggaggacatttactctgccaaac 444

                                                                       
Query: 245 tactttttcaactatcttacaaatagtaacaatcaaagccccttttagtcctaaaacaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tactttttcaactatcttacaaatagtaacaatcaaagccccttttagtcctaaaacaaa 504

                                                                       
Query: 305 caataaactagtcaagcccctgtctgcagctgttcttatgacacttgagtgggtagagaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caataaactagtcaagcccctgtctgcagctgttcttatgacacttgagtgggtagagaa 564

              
Query: 365 tgg 367
           |||
Sbjct: 565 tgg 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)