BAC Information

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BAC

Clone NameMSMg01-150G17
Chromosome4 (Build37)
Map Location 105,885,190 - 106,013,682
singlet/doubletdoublet
Overlap geneUsp24
Upstream genePpap2b, LOC433742, LOC665518, LOC434381, Ppia-ps4_954.1, Map1lc3, LOC384039
Downstream geneLOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150G17.T7 (MSMg01no150_g17.b1)MSMg01-150G17.TJ (MSMg01no150_g17.g1)
ACCAG352866AG352867
length738739
length of high quality
(start - end)		459 (37 - 495)477 (77 - 553)
definitionCHROMAT_FILE: MSMg01no150_g17.b1 PHD_FILE: MSMg01no150_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:58 2005CHROMAT_FILE: MSMg01no150_g17.g1 PHD_FILE: MSMg01no150_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,885,190 - 105,885,654)(106,013,206 - 106,013,682)
sequence
GGGCCGCTAAACGACTACTATAGTCAGAGGATCCGCGGAATTCTCTAGCT
AATGAAAAGAGGTATTGTTGCATCTCTGCTTCCCAGCAGTTCTTTGGCTT
TTCTGGCCCAATTTAACTTCAGCAAGATCTTCTTTCCCTCACTTGGAAAA
TAACACTAAGAGAAGCTAACATTCATTGAGCTTTTGTTAAGGCCAGCCAT
TTTTCTAAATGCATAGAAGTGACCTGAAGGAAATCTCCGCTTAGTGCTTC
TGTGTCCTTGTCACCATGCTTAAGAGGAGGGGAGAGACTTCTCAGAATCT
TGTCCCCAGGACTTCAGTAGCTCATTGTATGGGTAAGAATCAATGGAGAG
GAAGATTGGTCATAAAGAGGTGAGAAGTTCCTGGGATACATTGGGCTTTT
CTCACCCGCGGTCTGTCCCCCTCTTTTGAGCTTGTATTGGCTCGTCTGGC
ACCAGATAAAGGATAGAAACAGTGCGATGCCAAGGCTGTGGAGAGCCTGT
TACAGTGAGTCAAAGGAGAGTGTGGGTAGTTGTGGGTGCTCTTGCCTGAC
CAGACCCACGATGGCCTGTTGCAGTACCCCTCTGAATCATTATCTCCCAT
CAAAACACCGGAGCCCCTGGCCTATGTGACCACCCATCACCCCCGTTGTG
CCCCACAAATTATTTGTCCACCCCCACAATCCCTTTCCGGAAAGTCATGA
CCCCTCCCTTCAGCAATTGCCCTCCCCCTCCAAGCTCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCTTTCTCAAAAATTACTTCACC
AAACTCCAGAAATTCTCAACTTATCATTCTGATATCCCCACTCCCTCTCA
AAGGTTATCGTTCCCTTGAATTCTCATTTTCTCTTTATAAAATATTAAAA
CTACATCACTGTTGGTCACGCTGCTCTTTCTCTTTCTACCTTTGAGGCTG
AGCTTGAAGGAGGCATCTAGCCTGCTGTTTTTATCTCCCCACGTGGCACT
GACAAGAACTACTGATAATCCCCAATCAGGATCCCAGAGTCTTTACTCCC
CCAAAAGACTGCTGTTATGCCCACAACAGAACTTTACACAGCTTTAAACC
AACCATGTTTCAATCTTTCCCCAAAACTTCTCAGGAATATTTGATCTTCT
GCCTGACACTTCTCTTAAAAAGCTAGGTTTTGCCAGGCAGTGGTGGCTCA
CGCCTTTAATCCCAGCACTTGGGAGGCAAAGGCAAGCAGATTTCTGAGTT
CAAAGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACCC
AGGGAAACCCTGTCTCCCAAAACTAAAAACCCAAAACAAAAAAAGGCTAG
GTTTTTCTTCCTTTGCCGATGCCTACTTGAAAGCCTGGTTTTTCCTTCTC
GTCCCCCTTCTCCTTTATCCACCAACTGTGAGTCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_g17.b1 MSMg01no150_g17.b1 CHROMAT_FILE:
MSMg01no150_g17.b1 PHD_FILE: MSMg01no150_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:58 2005
         (459 letters)



>mm_chr4_105884989_105885847
          Length = 859

 Score =  768 bits (397), Expect = 0.0
 Identities = 445/465 (95%), Gaps = 7/465 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaattctctagctaatgaaaagaggtattgttgcatctctgcttcccagcagttctttgg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattctctagctaatgaaaagaggtattgttgcatctctgcttcccagcagttctttgg 261

                                                                       
Query: 62  cttttctggcccaatttaacttcagcaagatcttctttccctcacttggaaaataacact 121
           ||||||||||||||||||||||| ||||||||||||||||||||| | || |||||||||
Sbjct: 262 cttttctggcccaatttaacttcggcaagatcttctttccctcacctagacaataacact 321

                                                                       
Query: 122 aagagaagctaacattcattgagcttttgttaaggccagccatttttctaaatgcataga 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aagagaagctaacattcattgagcttttgttaaggccagccatttttctaaatgcataga 381

                                                                       
Query: 182 agtgacctgaaggaaatctccgcttagtgcttctgtgtccttgtcaccatgcttaagagg 241
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 382 agtgacctgaaggaaatctccgcttagtgcttctgtttccttgtcaccatgcttaagagg 441

                                                                       
Query: 242 aggggagagacttctcagaatcttgtccccaggacttcagtagctcattgtatgggtaag 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aggggagagacttctcagaatcttgtccccaggacttcagtagctcattgtatgggtaag 501

                                                                       
Query: 302 aatcaatggagaggaagattggtcataaagaggtgagaagttcctgggatacattgggct 361
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 502 aatcaatggagaggaagattggtcataaagaggtgaggagttcctgggatacattgggat 561

                                                                       
Query: 362 tttctcacccgcggtctgtccccctcttttgagcttgtattggctcgt-------ctggc 414
           |||||||   | ||||||||||||||||||||||||||||||||||||       ||| |
Sbjct: 562 tttctcaagtggggtctgtccccctcttttgagcttgtattggctcgttggatgtctgac 621

                                                        
Query: 415 accagataaaggatagaaacagtgcgatgccaaggctgtggagag 459
           |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 622 accagataaaggatagaaacagtgtgatgccaaggctgtggagag 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no150_g17.g1 MSMg01no150_g17.g1 CHROMAT_FILE:
MSMg01no150_g17.g1 PHD_FILE: MSMg01no150_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:58 2005
         (477 letters)



>mm_chr4_106013094_106013970
          Length = 877

 Score =  915 bits (473), Expect = 0.0
 Identities = 476/477 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctttctcaaaaattacttcaccaaactccagaaattctcaacttatcattctgatatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 589 atctttctcaaaaattacttcaccaaactccagaaattctcaacttatcattccgatatc 530

                                                                       
Query: 61  cccactccctctcaaaggttatcgttcccttgaattctcattttctctttataaaatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 cccactccctctcaaaggttatcgttcccttgaattctcattttctctttataaaatatt 470

                                                                       
Query: 121 aaaactacatcactgttggtcacgctgctctttctctttctacctttgaggctgagcttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aaaactacatcactgttggtcacgctgctctttctctttctacctttgaggctgagcttg 410

                                                                       
Query: 181 aaggaggcatctagcctgctgtttttatctccccacgtggcactgacaagaactactgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aaggaggcatctagcctgctgtttttatctccccacgtggcactgacaagaactactgat 350

                                                                       
Query: 241 aatccccaatcaggatcccagagtctttactcccccaaaagactgctgttatgcccacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aatccccaatcaggatcccagagtctttactcccccaaaagactgctgttatgcccacaa 290

                                                                       
Query: 301 cagaactttacacagctttaaaccaaccatgtttcaatctttccccaaaacttctcagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cagaactttacacagctttaaaccaaccatgtttcaatctttccccaaaacttctcagga 230

                                                                       
Query: 361 atatttgatcttctgcctgacacttctcttaaaaagctaggttttgccaggcagtggtgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 atatttgatcttctgcctgacacttctcttaaaaagctaggttttgccaggcagtggtgg 170

                                                                    
Query: 421 ctcacgcctttaatcccagcacttgggaggcaaaggcaagcagatttctgagttcaa 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 ctcacgcctttaatcccagcacttgggaggcaaaggcaagcagatttctgagttcaa 113


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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