BAC Information

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BAC

Clone NameMSMg01-150J10
Chromosome4 (Build37)
Map Location 26,305,129 - 26,305,666
singlet/doubletsinglet
Overlap geneLOC665079
Upstream geneLOC625732, Fut9, LOC100040780, Hn1-ps1, Manea, Bhmt-ps1
Downstream geneGng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150J10.T7 (MSMg01no150_j10.b1)MSMg01-150J10.TJ (MSMg01no150_j10.g1)
ACCAG352985AG352986
length731760
length of high quality
(start - end)
635 (67 - 701)396 (69 - 464)
definitionCHROMAT_FILE: MSMg01no150_j10.b1 PHD_FILE: MSMg01no150_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:11 2005CHROMAT_FILE: MSMg01no150_j10.g1 PHD_FILE: MSMg01no150_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAATCCGCGGAATTCA
TATGTGTTTCGCTGAGTCCTTGAAAAAGAAATTTTAAGTCATGTGCCACC
ACTGCCTCTTACAATCTTACACCTCTCACAATCTTCTCACCTCTTCTACT
GCATAGACCATTGAGTATTTCAGAGAGGAGTGAATTAGAGACAACCCAAT
TAGAGATGAGCACTATGAAGTTTCTCACATTCTGTGCAGCTGTGGTCCTC
TGCACCCAATACCATCTACTACAGGAAGCCTCTCTGTTTGGTTTTGAGTG
TATGAGTCTCCATGTGTTTACTGGAAGTCAAATAGGTCCTTTTGAAGACA
ACCAAGTGATCTTTGAATGGAACTAGCAATATGTCATTAGCAGTAGTGTA
TTAATATGTTCATGCAGTGTTAAATGTACAGATAAAGCTTGCCTTGTGCC
TTTCCATATAACTGTCACATCTTCCTGGATTACCTTCAAGAAGCCACTTC
CAATCAGTGGTGATGACACAAATGTGATGCATTGCATCAGACACTTGACT
AAAATGTCTCTCATCATCAGCTTTAGAGAGTCAAGCTGCAGGTGGTTCTG
AACATACTTCAGATGGCTCTTATTTTTCTCCATTTAGCATCTCTTTCAAG
TAAAACAACTTAAAAGGGTATCAGGAAGCAATTTATTGGAGGTTATATAT
TTATTTTAATCAGCATGGAGAATTGCCTCAA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGGAGAAGAGGGAGACAAAGGATTGTAGTAGC
CAGAGGAATCAAGGAAAGCAAAAGGAAAACCCACAGCATCAATGAACCTC
GGGCTTACAAAGACTGTAAACAACCAGGGAGCCTGTATAGGACTGAGTTA
GGGCCTCTACATATATGTTATAGCTGTGTAGCTTGGTCTTCTTGTGAAAT
TCCTAACAGTGGGAATGGAAGGCTGTCTCTGACCCTTTTGCCTCCTTTTG
GAACCTTTTTTTCCCCCCACTGGGTTGACTCATACAGCCTTAATAGGAGT
GGAGGTGCTTAGACTTATTGAACCTTGATATGTGGTGTTTGGTTGATATC
CTTGGGAGGCCTCCCCTACTCTGAGGGGAGACAGACAAAGAGTGGATAAG
GGTGGTGTGGTTGGAGCGAATATTACGCCTCGTCTAATCCAACTTTTATT
TAACGCTCTCCCCGCCCTCCCTAATTAAATTTCTTATCCCCTTCGTACCG
CCTTTTTTTATATCTCTTTCAGCTCGATAAATCCTGCCTTTTTCAAAATC
TTTGGATTTTATGCACTTCGGTCCCCTATCAGTTTATCCCTCCACTTTTT
ACACCTCCCTCTAACATTTTTATACTCTTAAGGCCGACGATCCCTCCGTT
TATTTTCCGCCCACCACCCCACCTTTTTCTTGCCCTCCTCTCCCCGCGAT
TGATCCTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_j10.b1 MSMg01no150_j10.b1 CHROMAT_FILE:
MSMg01no150_j10.b1 PHD_FILE: MSMg01no150_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:11 2005
         (635 letters)



>mm_chr4_26304632_26305666
          Length = 1035

 Score =  986 bits (510), Expect = 0.0
 Identities = 531/538 (98%)
 Strand = Plus / Minus

                                                                        
Query: 98   agtatttcagagaggagtgaattagagacaacccaattagagatgagcactatgaagttt 157
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 agtatttcagagaggattgaattagagacaacccaattagagatgagcactatgaagttt 976

                                                                        
Query: 158  ctcacattctgtgcagctgtggtcctctgcacccaataccatctactacaggaagcctct 217
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 975  ctcacattctgtgcagctgtggtcctctgcacccattaccatctactacaggaagcctct 916

                                                                        
Query: 218  ctgtttggttttgagtgtatgagtctccatgtgtttactggaagtcaaataggtcctttt 277
            |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 915  ctgtttggttttgagtgtatgagtctccatgtggagactggaagtcaaataggtcctttt 856

                                                                        
Query: 278  gaagacaaccaagtgatctttgaatggaactagcaatatgtcattagcagtagtgtatta 337
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 855  gaagacaaccaagtgatctttgaatggaactagcagtatgtcattagcagtagtgtatta 796

                                                                        
Query: 338  atatgttcatgcagtgttaaatgtacagataaagcttgccttgtgcctttccatataact 397
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795  atatgttcatgtagtgttaaatgtacagataaagcttgccttgtgcctttccatataact 736

                                                                        
Query: 398  gtcacatcttcctggattaccttcaagaagccacttccaatcagtggtgatgacacaaat 457
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735  gtcacatcttcctggattaccttcaagaagccacttccaatcagtggtgatgacacaaat 676

                                                                        
Query: 458  gtgatgcattgcatcagacacttgactaaaatgtctctcatcatcagctttagagagtca 517
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675  gtgatgcattgcatcagacacttgactaaaatgtctctcatcatcagctttagagagtca 616

                                                                        
Query: 518  agctgcaggtggttctgaacatacttcagatggctcttatttttctccatttagcatctc 577
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615  agctgcaggtggttctgaacatacttcagatggctcttatttttctccatttagcatctc 556

                                                                      
Query: 578  tttcaagtaaaacaacttaaaagggtatcaggaagcaatttattggaggttatatatt 635
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555  tttcaagtaaaacaacttaaaagggtatcaggaagcaatttattggaggttatatatt 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)