BAC Information

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BAC

Clone NameMSMg01-150L12
Chromosome4 (Build37)
Map Location 79,838,018 - 79,838,391
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040036, LOC667922
Downstream geneTyrp1, D4Bwg0951e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150L12.T7 (MSMg01no150_l12.b1)MSMg01-150L12.TJ (MSMg01no150_l12.g1)
ACCAG353079AG353080
length706707
length of high quality
(start - end)
---375 (78 - 452)
definitionCHROMAT_FILE: MSMg01no150_l12.b1 PHD_FILE: MSMg01no150_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:21 2005CHROMAT_FILE: MSMg01no150_l12.g1 PHD_FILE: MSMg01no150_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGAATCCG
CGGAATTCATTCTTTTTCTCCAACTCCTTTATACGATTCTGCTGAAGCTA
CTCTCATCATTATCTGAATCTTATCTTCTCTGAGAAAAGTCATTGACCTT
GTCTCTACTGATATCTTAATCCAACACACTGTGCCTCTTTTCTGAATGAC
CACTAGATTTTAAATAATTCATGAATAGCATATTGAATTAAATATCATAA
TATTCAGGAATAATGGCAAAGCCAATTGAACATGATTCATTAGATTGAAA
AGTCATGCATGAAAGGATATACTTTATGAATAAATCCCTCAGGAGAAATT
TATACTTATTATTACAACCTGTTTCTTTGCATTTTTCTGACTGATGCCAA
CTCTTATTTCCTGCTTTCACCCTGCCTCAAAACTACCTCTTGCTCCCTGA
CTGTGAGCTCCCTGATTTACTAAATTCAACTAATATTGCATTTAAGCTGA
GACAATCCCCAGATTTTTCTCAATCTCATTTTTGTGATAATCCTTTTCCA
ATCCCACTGTATCTAATATATGAATGCATACATATTATATGTGTTTAAAT
ACAGATATGTATCTAAGTACATGTGAATTACAAGTCATGAGACTATTTAG
ACGATTCGTGATATATACTTTTTAGAAACTGCCTTTAATGCTGCTAGTAT
ATTCTG
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACCTCCAAAGTTTAAACTTTTCC
AGGGAAAGTTACTGAGTCTGGCCTCATCGCAGTCATTTAGTCAGACTGGC
TCATTGATTTGTCATTCCAGAAATCCCATTACTGTCTACCTCTGAGTTAT
GCTTGGAGCACTGTCAAGTGAAAATGGGCCCAAGTGACTCTGGATCTATC
TCATCTAAAGACTGAATTTTTGAGCTCTACTCCATGAAGCTTGTTATGCA
TATTTTCAGGGGCCATCTCACATTCCCTCTATCTGTTAGACAAGATTTCA
TTAGTTATTCCTTTCTTTTTGTTTGCTGGAAAGCCTCAATGAAAATGAAA
AACCTCCATATTTCAATGACCAAATATGGTTTGTTATTTTGATTTTAAAA
TGAGCCCATTAGTTATCAGGTCTGGAGACCTATAGTCTCCACGATATAAT
TTATCTATCTATCTATCTATCTATCTATCCATCCATCTATCTATCCATCT
ATCTATCTATCTATCTAGCTATCTATTTGTTAGTTCATTTGATTAGTTAC
TTATCTAGACCGATCATTCTCTGTGTGTCCCAGGTTATTATAGAGGAGGT
CATGCTTTCAGTTATTCACCTTTACCGCCTCTTTTGTACACATGCTGGAC
GCTAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_l12.g1 MSMg01no150_l12.g1 CHROMAT_FILE:
MSMg01no150_l12.g1 PHD_FILE: MSMg01no150_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:21 2005
         (375 letters)



>mm_chr4_79837818_79838591
          Length = 774

 Score =  629 bits (325), Expect = 0.0
 Identities = 364/379 (96%), Gaps = 9/379 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctccaaagtttaaacttttccagggaaagttactgagtctggcctcatcgcagtcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 acctccaaagtttaaacttttccagggaaagttactgagtctggcctcatcgcagtcatt 515

                                                                       
Query: 61  tagtcagactggctcattgatttgtcattccagaaatcccattactgtctacctctgagt 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 514 tagtcagactggctcattgattcgtcattccagaaatcccattactgtctacctctgagt 455

                                                                       
Query: 121 tatgcttggagcactgtcaagtgaaaatgggcccaagtgactctggatctatctcatcta 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 454 tatgcttggagcactgtcaagtgaaaatgggcccacgtgactctggatctatctcatcta 395

                                                                       
Query: 181 aagactgaatttttgagctctactccatgaagcttgttatgcatattttcaggggccatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aagactgaatttttgagctctactccatgaagcttgttatgcatattttcaggggccatc 335

                                                                       
Query: 241 tcacattccctctatctgttagacaagatttcattagttattcctttctttttgtttgct 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 334 tcacattccctctatctgttagacaagatttcattagttattcctttc-ttttgtttgct 276

                                                                       
Query: 301 ggaaagcctcaatg-aaaatgaaaaacctccatatttcaatg---accaaatatggtttg 356
           || || |||||| | |||||||||||||||||||| ||||||   |  ||| ||||||| 
Sbjct: 275 gg-aaccctcaa-gaaaaatgaaaaacctccatatctcaatgaaaa--aaaaatggtttc 220

                              
Query: 357 ttattttgattttaaaatg 375
           |||||||||||||||||||
Sbjct: 219 ttattttgattttaaaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 774
Length adjustment: 9
Effective length of query: 366
Effective length of database: 765
Effective search space:   279990
Effective search space used:   279990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)