BAC Information

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BAC

Clone NameMSMg01-150P06
Chromosome4 (Build37)
Map Location 99,505,687 - 99,506,174
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039541, Usp1, Dock7, Angptl3, LOC665193, Atg4c, LOC665212, LOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp
Downstream geneBC020077, Pgm2, Ror1, Ube2u, LOC277707, LOC621573, Cachd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150P06.T7 (MSMg01no150_p06.b1)MSMg01-150P06.TJ (MSMg01no150_p06.g1)
ACCAG353252AG353253
length721724
length of high quality
(start - end)
488 (68 - 555)423 (71 - 493)
definitionCHROMAT_FILE: MSMg01no150_p06.b1 PHD_FILE: MSMg01no150_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:39 2005CHROMAT_FILE: MSMg01no150_p06.g1 PHD_FILE: MSMg01no150_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGCCTTCTCTAGAAATAATTTCTTTAAACTAAAATTCTGCCGTGT
TTCTGCAGAAATGTCTTAAGTTTTTATGCATATGATCTTTCTGAGAAAAT
TAATTTGGAGGAATGATTAAAAATTGACAAGATTAACATATATTGCTATC
TAAATAAGAGATTTATTAAATAGTTTTAAAACAAATGTGCATGATGTAAG
CCATTTTCAAAATACGCATAATTTTACTTTGACTTATATAATATTAAAAT
TAGCAAACTTTCATCTTGAATTTTAAATATTTGTATTTAGTTGGCATATA
TTAAATAGTATAGGCAGAAATCCAGTTAATTAAAACTTCAATTTGCTGCT
GTTGCTAAAATACCTGAGCTCTTTTTCTTTTGAAAATAGACAATAAATTT
GTTAAGTTGAAGACTTTTAGCACAGCTTGCTTTGGTATAGTACTTGAATT
GCTAATCAATAAACATGTGTTAATAACATAGTGCTGGTCCTGTGGAATCA
TCTGGGTAGAAAACAGTTATAGCATCTCCAGCGCTACATGTGGTTTTGGT
TCAAGGTGGCATGTTCTTTGTTGAACTGTTGGCATAACATAGTGTTCACA
AAGGAGTAATGTGTGGTACGCCGTGTCTTCTCTTACTGCTCCTTTTTCCT
GTAGACTTCTGGCCCTTCGCC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCAGAGAAG
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATCTACCCAATGGAGTACTACTCAGCTATTAAAAAGAGATGAGTTTAT
GATATTCCTAGCCAAATGGATGGACCTGCAGGGCATCATCCTGAGTGAGG
CAACACATTCCCAAAGGAACTCCCACAATATGTACTCACTGATAAGTGGA
TCATAGCCCCACACCCTAGGATACCCAAGATATAAGATACAATTTGTTTA
GACCCCTGTAACGGCAAGAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_p06.b1 MSMg01no150_p06.b1 CHROMAT_FILE:
MSMg01no150_p06.b1 PHD_FILE: MSMg01no150_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:39 2005
         (488 letters)



>mm_chr4_99505487_99506374
          Length = 888

 Score =  920 bits (476), Expect = 0.0
 Identities = 485/488 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaataatttctttaaactaaaattctgccgtgtttctgcagaaatgtcttaagtttttat 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaataatttccttaaactaaaattctgccgtgtttctgcagaaatgtcttaagtttttat 260

                                                                       
Query: 61  gcatatgatctttctgagaaaattaatttggaggaatgattaaaaattgacaagattaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatatgatctttctgagaaaattaatttggaggaatgattaaaaattgacaagattaac 320

                                                                       
Query: 121 atatattgctatctaaataagagatttattaaatagttttaaaacaaatgtgcatgatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatattgctatctaaataagagatttattaaatagttttaaaacaaatgtgcatgatgt 380

                                                                       
Query: 181 aagccattttcaaaatacgcataattttactttgacttatataatattaaaattagcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagccattttcaaaatacgcataattttactttgacttatataatattaaaattagcaaa 440

                                                                       
Query: 241 ctttcatcttgaattttaaatatttgtatttagttggcatatattaaatagtataggcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttcatcttgaattttaaatatttgtatttagttggcatatattaaatagtataggcag 500

                                                                       
Query: 301 aaatccagttaattaaaacttcaatttgctgctgttgctaaaatacctgagctctttttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatccagttaattaaaacttcaatttgctgctgttgctaaaatacctgagctctttttc 560

                                                                       
Query: 361 ttttgaaaatagacaataaatttgttaagttgaagacttttagcacagcttgctttggta 420
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 ttttgaaaatagacaataaatttgttaagttgaagacttttagtacagcttgctttggta 620

                                                                       
Query: 421 tagtacttgaattgctaatcaataaacatgtgttaataacatagtgctggtcctgtggaa 480
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagtacttgaattgctaatcaattaacatgtgttaataacatagtgctggtcctgtggaa 680

                   
Query: 481 tcatctgg 488
           ||||||||
Sbjct: 681 tcatctgg 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)