BAC Information

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BAC

Clone NameMSMg01-151G04
Chromosome4 (Build37)
Map Location 65,651,763 - 65,651,917
singlet/doubletsinglet
Overlap geneAstn2
Upstream genePappa, Trim32
Downstream geneLOC667499, Tlr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151G04.T7 (MSMg01no151_g04.b1)MSMg01-151G04.TJ (MSMg01no151_g04.g1)
ACCAG353565AG353566
length730711
length of high quality
(start - end)
261 (115 - 375)54 (77 - 130)
definitionCHROMAT_FILE: MSMg01no151_g04.b1 PHD_FILE: MSMg01no151_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:10 2005CHROMAT_FILE: MSMg01no151_g04.g1 PHD_FILE: MSMg01no151_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:10 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCGAAGCTATATGTGTGACTGCCAAACTAAGATGGAATGATAGGAAT
GGCAAACACGAACTGGGTAAAATCACTGTGAATGGCCTGCACCACACCCA
GACACACACTCAGCATCACTCACCTGTCACTACCCATTAGCTATTATACT
TTAGGAGGTAATGATACCCAAGCTTTAGTTACTTGTTTGTACATATGTAG
AAAGCAAGATAAATTACTCAACAGTACGATAAAACAGCTTGATAGCAATG
TCCCCAGGCTTAGAGATAATGCCAGACTTATTTAAAATGTTTCTTATTTC
ATCTACTTTGCCTTTCATTGACTGGGTCTTTGCATATAAAACAAATGCAA
TGATAGTTCTACCCCCCCCATAGGTATACTGTGAATGAGATAACTTCTTC
TAGATAGTTATCAAATTTTCAAACACCATGCATCTGGCAAAGTACAAAAT
AAAGGGCCCGCCCAGACACATGCAGAGAAATTTGGGGGCCAAATTTCAGC
ACTACCCCCTATAGGCAAAGAATAACGATGACTCAGAAACCGGAAATTGC
TCCCGTACCCCACGCAACTGACTTCTCTAATTCCCGACACGACTATACCA
TGATAATCCATCTTTTCTCATCAAGAATACCAACTTCTGGCAGTACTTGA
CACCATGAGGATAACTTTGTGTCTGCCTCC
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAGTCCCTGCTTTTCTCGTGC
AGAAAGAGGAAAGTGGAGCTCTGTTTGCCATGGTGTGCTTTTGTTAAGAG
TAATTAAAAAGTGAGCCAATATAATGATACTTTACGGATAAGTCTTCATG
TCTAGGCTGTGTGGACAGACTTTTGTTGTGATTGTATTTTAAAATGACAC
AGACTTTGAATTGAATTCCAAGAAGGGAACCCTATTATTCAATAGAGTGT
GAGTTTAGGGCTCATAAAGGCAATGCTTAAGAGCACTGGCCTTTGGACTA
TATGTAGAAAAATTTGATCGATGATCCTGCAGATTACTATGTCAGGTTAT
GGCTGGACGGGTAACTGCCCTACTCTGAACCTCATCTTCTCCACCTTTAA
CATGAAAACAGTACTGCCATTGCCTCAAGTGGATAGAGTTGTAAGAATGG
AGCAAAGTACTGCAGAGCCTGAACTAATAGAAAGACCAGTAATGATTTCC
ATGATAAGAAGCATGCAATGCTACAGCCTCAACCTGGATCTTGTATTGCC
CACAACAAAAAGAGGCATCTAGTCCCAGTGGTCACACCCCCAGCAGTGTC
CCATCTCCAGAAAAGACCAGAGTATCCATTCCCTTTTCTTCCTGTAACTT
GTCCCATTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_g04.b1 MSMg01no151_g04.b1 CHROMAT_FILE:
MSMg01no151_g04.b1 PHD_FILE: MSMg01no151_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:10 2005
         (261 letters)



>mm_chr4_65651563_65652223
          Length = 661

 Score =  300 bits (155), Expect = 6e-86
 Identities = 155/155 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggtaaaatcactgtgaatggcctgcaccacacccagacacacactcagcatcactcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gggtaaaatcactgtgaatggcctgcaccacacccagacacacactcagcatcactcacc 296

                                                                       
Query: 61  tgtcactacccattagctattatactttaggaggtaatgatacccaagctttagttactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tgtcactacccattagctattatactttaggaggtaatgatacccaagctttagttactt 236

                                              
Query: 121 gtttgtacatatgtagaaagcaagataaattactc 155
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 gtttgtacatatgtagaaagcaagataaattactc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 661
Length adjustment: 9
Effective length of query: 252
Effective length of database: 652
Effective search space:   164304
Effective search space used:   164304
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)