BAC Information

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BAC

Clone NameMSMg01-151I17
Chromosome4 (Build37)
Map Location 98,384,432 - 98,384,775
singlet/doubletsinglet
Overlap geneInadl
Upstream geneNfia, LOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1
Downstream geneL1td1, Ankrd38, LOC100039541, Usp1, Dock7, Angptl3, LOC665193, Atg4c, LOC665212, LOC638890, LOC100042589, Foxd3, Alg6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151I17.T7 (MSMg01no151_i17.b1)MSMg01-151I17.TJ (MSMg01no151_i17.g1)
ACCAG353680AG353681
length749743
length of high quality
(start - end)
345 (71 - 415)431 (71 - 501)
definitionCHROMAT_FILE: MSMg01no151_i17.b1 PHD_FILE: MSMg01no151_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:23 2005CHROMAT_FILE: MSMg01no151_i17.g1 PHD_FILE: MSMg01no151_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAACATCCGCG
GAATTCTGCAGCATTTTCGTGAAAAAGTGTGTCATGATCAGGACCCGCAG
CTCACGGCAGCACAGTCAAGGCCACAGTCCCTCTCTGCTGCTTTAGAATG
GAGGCAGCTTGCTCATGGTAATGCCTTCCAGGGTCTCGCCATTTCAGCTA
AGATCTGGTCACTTCACTTTAATCAGCCGTCCTCTGCATCTGCTCCCTGC
AAACAAGAAACAGTCCAGCTTAGACCAGTGTTAAGCAGATTAAATCAATA
TTAAAACCGCTACCTTATGCCTGTGCTTATCAAAAGACTTAATTTAAAGA
CTTCAATTAATTTTTAAAAAAGATTTATTTGTTATTATAGATAAAGTACA
CCGTAGCTGACTTCTCCCGCCCCAGAAGAGGGCATCAGATATCATTACGG
ATGGTTGTGAGCCACCATGTGGCTGCTGGGATTTGAACTCAAGACCTTCA
GAACAACCGTCAGCGCTCTTACCCACTGAGGCATCTTGCCCACCCCCAAT
CACTTTTTGTCTTTATTTTCCGCGACCGCTTTTCCCTCCCCCCCCCCTGC
CCCGCCCCGCCAACTTTCTCCGCACAACCCTGCCCCTCTCCAACCCCTAC
CCCCCTTCCGCCCCTGCCCCCCCTAACCCCCTTTATTCCCCCCCTTTCCC
CCCCCACTCCTCCCCTTCTTACTCCCCCCCCCTTTCCCCTTCCCCCCTT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTAAGGAAGGCTAGGAGATGGGGGGTCAC
ACTTACTGTGTTCCTATGGAAACTTGGAATGTTTGTTTTATATGGATTTT
TATTCAGTTTTCCAACATGATACTAACGAGTGCCCTCAGCTGCTGAGCAA
GTGTATGTAGCTTGTGCATTGGCTGAAGCTCATGTTGTGACCCATTGTGA
AAATAAAGTATCTTGAAATAATTGGGCATCAGGGAATGTTTGCAAGTATC
CCTTAAAGAAGACACCAACTTCAGCACAGCCTGCTGTATCCGGTGAGTCT
AGCTCAGCACAGCACATAGGAGAGGTGGATGGCACAAGGCTGTGCCCTCT
CTGTACAGCCTCCATTTGCTTAGCCCATCCCAAGTGTGTGCAGTTGACTG
TGGACTTTGGGGCCCAGTGTCTGTTGGTGAGGAATGTCATTTGCCTAGCG
ACCTGTTGGCCTGGCCACTTCCTAGGGAGGACATCGAGGCTCTTTGAACC
TTGCCTGCAGAAACCCTGACTGTTTCCCTCAACCTTGACTTTCCCTGCAT
CATCCACTAGTAACAGTTGGAAGCACCATACCCCATTTGCCCGGCCATTT
CCTGCATTACATTCCCCCACCTTCTTCTCCAACTACCGCTACAAAGCCCC
CCCTGCCCCACCCATATTTCCCCCCTCCTTTTATTTCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_i17.b1 MSMg01no151_i17.b1 CHROMAT_FILE:
MSMg01no151_i17.b1 PHD_FILE: MSMg01no151_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:23 2005
         (345 letters)



>mm_chr4_98384286_98385030
          Length = 745

 Score =  658 bits (340), Expect = 0.0
 Identities = 343/344 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaaaagtgtgtcatgatcaggacccgcagctcacggcagcacagtcaaggccacagtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gaaaaagtgtgtcatgatcaggacccgcagctcacggcagcacagtcaaggccacagtcc 431

                                                                       
Query: 61  ctctctgctgctttagaatggaggcagcttgctcatggtaatgccttccagggtctcgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctctctgctgctttagaatggaggcagcttgctcatggtaatgccttccagggtctcgcc 371

                                                                       
Query: 121 atttcagctaagatctggtcacttcactttaatcagccgtcctctgcatctgctccctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atttcagctaagatctggtcacttcactttaatcagccgtcctctgcatctgctccctgc 311

                                                                       
Query: 181 aaacaagaaacagtccagcttagaccagtgttaagcagattaaatcaatattaaaaccgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aaacaagaaacagtccagcttagaccagtgttaagcagattaaatcaatattaaaaccgc 251

                                                                       
Query: 241 taccttatgcctgtgcttatcaaaagacttaatttaaagacttcaattaatttttaaaaa 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tagcttatgcctgtgcttatcaaaagacttaatttaaagacttcaattaatttttaaaaa 191

                                                       
Query: 301 agatttatttgttattatagataaagtacaccgtagctgacttc 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 agatttatttgttattatagataaagtacaccgtagctgacttc 147


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)