BAC Information

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BAC

Clone NameMSMg01-151K17
Chromosome4 (Build37)
Map Location 24,172,059 - 24,172,365
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625462, LOC383998, LOC100040464, LOC623873, LOC664973
Downstream geneF730047E07Rik, Klhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151K17.T7 (MSMg01no151_k17.b1)MSMg01-151K17.TJ (MSMg01no151_k17.g1)
ACCAG353768AG353769
length759743
length of high quality
(start - end)
208 (71 - 278)307 (72 - 378)
definitionCHROMAT_FILE: MSMg01no151_k17.b1 PHD_FILE: MSMg01no151_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:32 2005CHROMAT_FILE: MSMg01no151_k17.g1 PHD_FILE: MSMg01no151_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACACATCCGCGGAA
TTCTCTGTTTATTTCTGATCCCCATTTTTTAATAGCGTTATTTGGTTCTC
TGGAGTCTAACTTCTTGAGTTCTTTGTATATATTGGATTTTAGCCCTGTA
TCAGATGTAGGGTTGGCAAAGATCTTTTACCAATCTGTTGGTTGCTGTTT
TGTCTTATTGACAGTGTCCTTTGCCTTATAGAAGCTTTGCAATTTTATGA
CGTCCCATTTGTCAATTCTTGATCTTAGAGTATAAGCTATTGGTGTTCTG
TTCAGGAAAATTTCCCCCATGTCTTTGTGCTTGAGGCTCTTCCACACTTT
CTTTTCTATTATTTTCTGTTTTTATGCGCAGGTTCTTGATCTACTTGGAC
TTGAGCTTTGCCCCCCCCCCCAACAACGAATGAACCTGCATTCCTTTCCA
CTCGACTCTTATCCGCCGTCCCCCCCCCCTTACCCCCCTGACCCCTTATG
ACCTCCCTTGTCCCCCTTTCCCCCCGTACCTCCCCCCCACTTCCCCTTTC
CCCCCTTTCCTCCTTTTTCTCCCCCTTTCCTTTTTCTTTCCCCCCCCCTT
TCCCCCCCCTCCCCTCTAATCTCCCTGCCTTCCCTTCCCCTATCCCTTTC
CCTTCCCCCTTTTCCCTCCCCTTCCCCCCTTTTCCCCCTTTTTTCCTCCC
CTCTTTCCCCCCTTTACCTTTCCCTTTTTTCCCCCCCCCCCCTTTCCCCT
TCCCCCCTT
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAACATGATTGAATTGGGCACAATATTAAATA
AAAAATAAAACATTCCTTCTGCCTCAAAGACTCCTGAATAAAGAGAAAAT
TATTTTTGGATTTCTCTCTTGATCAGATATGAAATACTCTGAAACGCCAC
CTCTATAATTTGATAAAACTTTGATATCCCCAAATGAAAATAGGACTCAG
CACTTTCATTTTCCTGATGCTAAAGGAGCCTGGGTAAACTGATTTTTTTT
TTTAATGAAAATCTCAGGCATAAAGGTGGCAGCAATGAAGCAGGCTTAAA
TATGCGCTGACCTTTGAAATGAACTGCGCTCCTGGTTGTTTGGTCAAAGA
TCTGGCTTTGCCACTGTCTCCATCTATTCCTAGCGTGCAGGATGTAGGTG
TCGGAGCGGTTCTGCTCTCTGGTGGATGTTGACAGCCCGGTTGCCAACAC
CGCAGCCCCAACAGATACAGTCCGCCACCATGGACCAGAACAACTCACCA
CCCATCTGCCAGAGTCATAACTGCCAACACCCCTTTATAGGCTCCTGAAC
CCGACCGCCTAACAAACTGTGAAACCGTCTGTGTTTTGCCCAAGCTCTAT
ATTTCGGTTAATATCCCCGCCATATCCCCCATATTCCCCTGCCATACCCC
CCCAATCCCTCGACCTTTTCCGCCATCCCTCCCCCCCCCTCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_k17.g1 MSMg01no151_k17.g1 CHROMAT_FILE:
MSMg01no151_k17.g1 PHD_FILE: MSMg01no151_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:32 2005
         (307 letters)



>mm_chr4_24171859_24172567
          Length = 709

 Score =  574 bits (297), Expect = e-168
 Identities = 304/307 (99%), Gaps = 2/307 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgattgaattgggcacaatattaaataaaaaataaaacattccttctgcctcaaagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgattgaattgggcacaatattaaataaaaaataaaacattccttctgcctcaaagac 260

                                                                       
Query: 61  tcctgaataaagagaaaattatttttggatttctctcttgatcagatatgaaatactctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctgaataaagagaaaattatttttggatttctctcttgatcagatatgaaatactctg 320

                                                                       
Query: 121 aaacgccacctctataatttgataaaactttgatatccccaaatgaaaataggactcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacgccacctctataatttgataaaactttgatatccccaaatgaaaataggactcagc 380

                                                                       
Query: 181 actttcattttcctgatgctaaaggagcctgggtaaactgattttttttttt--aatgaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 381 actttcattttcctgatgctaaaggagcctgggtaaactgatttttttttttttaatgaa 440

                                                                       
Query: 239 aatctcaggcataaaggtggcagcaatgaagcaggcttaaatatgcgctgacctttgaaa 298
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatctcaggcataaaggtggcagtaatgaagcaggcttaaatatgcgctgacctttgaaa 500

                  
Query: 299 tgaactg 305
           |||||||
Sbjct: 501 tgaactg 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 709
Length adjustment: 9
Effective length of query: 298
Effective length of database: 700
Effective search space:   208600
Effective search space used:   208600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)