ATAATTTGCNCCGCTAAACAACTACTATATTCAAAAAACCGCGNAATTAA
AGGATCTTCAAAGATTTCTCCCCAAANTGACAAAGTAAATGATTCACTGA
AAGGTCTCTCTGCANAAAACCAGGACAGGATACCCTAAAGAAACACAAAT
ACCATACAACTTAAGGTGTTGACGCACAGTGAGATCTAGTGGGGGGGGGG
GGGGGGGGGGGGGGGGGNNTTNCCTAAATTTAAANATTTNCTTTAAATAA
CNAATTTAAAAGTAAAATAAACTTCCCCTATTTAAATTNNAAAAATTACC
TTTAAAAATTTTTTTAAGGAAAAATCTTTTTTTTAAAAAAAATTTTGNTA
AAATTTTTTTTTTGGTTCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGTTATTTTNNNNAAATTTTTTTTATATTTTTTTTTAAGAGACTTGGGGG
GTGGGGGCACAAAAATATATAAAATTCCCCCTCTTAAAAATTTTTTTTTT
TAAAAACAAAAAAATTTTTTTTTATTTTATCCCCAAAAATTTTTTTTCTA
AAAAAAACTTTTNAAAAAAAAATTTTTAAAAAATATGTGGTAGGTGTTGG
GGNCCTCNNNNNNATAATAATNNNNNNAAAAAAAAAAAACAAAAAAAAAA
AAAAAATTTTTTTTTTTTATTAATATTTAATCTCCCTTTCTTTAAATTTT
ATTTAACAACAAAAAAAAATTTTTATTAAAAATAAATTATTATACTCTNN
CCNTATCNCNATTTATTATATTTTTATATTATAAATGGAGGGGTG

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAATAGGACCTCTTTAAAGTCTAA
AAAACCCTACACCCACCCAGATCATCTGTAAGTAGAGTTAAATTTAGTTT
AGAGAACTCAGAAGAATAGAATTTAATTGAAGTCAGAATTAGATTGAATT
TGAATTGATTCACGTATTAAATCAGAAAGGGATTGAACTGAGTGGAGAAG
AATCTGAGAATGAACTATGCAGAGGTTGAATTTTATAAAGACTGAGTTTT
GCAGAGGATGTATTGAGTAGCTTGGTAGAGATTTGGCTTTACAAGGAACA
GAGTCACCCGACACACATTAAACATTTCAGAGCCTTTATTAATTATTCCA
AAAGTCTTTTCAGCATGCCTATTTGGGTCATCTCTTGACACTTTCTATAG
AAAGGGTGGAATGCTCATCTACAGGTATCCTTCTTGGTTTTCCCTTTTCG
CCTTTCAGTCCCTCCTTCTTCCATTCATTTTAAAAGCACAAAGGAGTCAG
CTTCCCCTTCTTCCTTAGAACAGAAGAGTGTTTAACTCTTCTTTGACAGT
CGGGCTATTTTTTCTTTTTCTTTCTCTGTTGTGATAAAATACACAGATAA
GATGCAGGCTTACTTTGGTTCATAGTTCAAGAGCAGTCCACATGGCAGGG
AAATCAAGGTAGCAGGCTCTCGAAGCAATTGG

Query= MSMg01no151_l03.g1 MSMg01no151_l03.g1 CHROMAT_FILE:
MSMg01no151_l03.g1 PHD_FILE: MSMg01no151_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:34 2005
         (594 letters)



>mm_chr4_82823372_82824368
          Length = 997

 Score =  988 bits (511), Expect = 0.0
 Identities = 575/597 (96%), Gaps = 3/597 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaataggacctctttaaagtctaaaaaaccctacacccacccagatcatctgtaagtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 caaataggacctctttaaagtctaaaaaaccctacacccacccagatcatctgtaagtag 909

                                                                       
Query: 61  agttaaatttagtttagagaactcagaagaatagaatttaattgaagtcagaattagatt 120
           ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 908 agttaaatttagtttagagaaatcagaagaatagaatttagttgaagtcagaattagatt 849

                                                                       
Query: 121 gaatttgaattgattcacgtattaaatcagaaagggattgaactgagtggagaagaatct 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaatttgaattgattcacgtattaaatcagaaagggattgaactgagtggagaagaatct 789

                                                                       
Query: 181 gagaatgaactatgcagaggttgaattttataaagactgagttttgcagaggatgtattg 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 788 gagaatgaactatgcagaggttgaattttataaagaccgagttttgcagaggatgtattg 729

                                                                       
Query: 241 agtagcttggtagagatttggctttacaaggaacagagtcacccgacacacattaaacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 agtagcttggtagagatttggctttacaaggaacagagtcacccgacacacattaaacat 669

                                                                       
Query: 301 ttcagagcctttattaattattccaaaagtcttttcagcatgcctatttgggtcatctct 360
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ttcagagcctttattaattgctccaaaagtcttttcagcatgcctatttgggtcatctct 609

                                                                       
Query: 361 tgacactttctata--gaaagggtggaatgctcatctacaggtatccttcttggttttcc 418
           || |||||||||||  ||||||||||||||||||||||  |||||||||||||||| |||
Sbjct: 608 tggcactttctatatagaaagggtggaatgctcatctatgggtatccttcttggttatcc 549

                                                                       
Query: 419 cttttcgcctttcagtccctccttcttccattcattttaaaagcacaaaggagtcagctt 478
           |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 548 cttttcgcctttcagtccttccttcttccattcattttaaaaccacaaaggagtcagctt 489

                                                                       
Query: 479 ccccttcttccttagaacagaagagtgtttaactcttctttgacagtcgggctatttttt 538
           ||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 488 ccccttcttgcttagaacagaagagtgtttaactcttctttgacagttgggttatttttt 429

                                                                    
Query: 539 -ctttttctttctctgttgtgataaaatacacagataagatgcaggcttactttggt 594
            ||||||||||||||||||| ||||||||| ||||||| || |||||||||||||||
Sbjct: 428 tctttttctttctctgttgtaataaaatacgcagataaaatacaggcttactttggt 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 997
Length adjustment: 10
Effective length of query: 584
Effective length of database: 987
Effective search space:   576408
Effective search space used:   576408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)