Query= MSMg01no151_l07.b1 MSMg01no151_l07.b1 CHROMAT_FILE:
MSMg01no151_l07.b1 PHD_FILE: MSMg01no151_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:35 2005
(664 letters)
>mm_chr4_72753486_72754549
Length = 1064
Score = 1187 bits (614), Expect = 0.0
Identities = 647/658 (98%), Gaps = 3/658 (0%)
Strand = Plus / Plus
Query: 8 gaattccaattgagacaccatgtctctatctgtatcagtccccgcctcccggttcctgcc 67
||||||||||||||| | ||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 209 gaattccaattgaga-aaaatgtctccatctgtatcagtccctgcctcccggttcctgcc 267
Query: 68 ttgagttctggccatggtaataattaaggtgtaagaactaatagacatttcctctccaat 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttgagttctggccatggtaataattaaggtgtaagaactaatagacatttcctctccaat 327
Query: 128 tagtttttggacagtgtttcatcataaacatcagaaatcaaactgacacatatacaatat 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tagtttttggacagtgtttcatcataaacatcagaaatcaaactgacacatatacaatat 387
Query: 188 ctgattccaatctctggcaattca-acaaaattccaaagctatggaagttagtgtatggg 246
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 388 ctgattccaatctctggcaattcaga-aaaattccaaagctatggaagttagtgtatggg 446
Query: 247 gagttttcaaaagtaataataataattcactccttcaagtaaattataacttcctctttg 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gagttttcaaaagtaataataataattcactccttcaagtaaattataacttcctctttg 506
Query: 307 ttcatttttgtctctttcttccttcagggttttttcagatcgagtttctggtttatttgt 366
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 507 ttcatttttgtctctttcttccttcagggtttgttcagatcaagtttctggtttatttgt 566
Query: 367 ttgttttgtattacttagttattttaaagatctaatatgtatgttgccaagtttccatta 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttgttttgtattacttagttattttaaagatctaatatgtatgttgccaagtttccatta 626
Query: 427 tccagccatttatacacattaagggatagattcgatttatattctgaagtagttatctag 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tccagccatttatacacattaagggatagattcgatttatattctgaagtagttatctag 686
Query: 487 cttctactagaaagttatgtcaatgaaaacaaggcactgattcttgcaactataatacaa 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 687 cttctactagaaagttatgtcaatgaaaacaaggcactgattcttgcaactataaaacaa 746
Query: 547 attttaagaagtaaaaaaaggtactatagatatttgagatataaattacctaatttacct 606
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 747 attttaagaagtaaaaaaaggtacaatagatatttgagatataaattacctaatttacct 806
Query: 607 gtgatgtttgccatcatagaaataaaatgctcaaatggaaagaatgcactcaaattaa 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gtgatgtttgccatcatagaaataaaatgctcaaatggaaagaatgcactcaaattaa 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no151_l07.g1 MSMg01no151_l07.g1 CHROMAT_FILE:
MSMg01no151_l07.g1 PHD_FILE: MSMg01no151_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:35 2005
(648 letters)
>mm_chr4_72819167_72820206
Length = 1040
Score = 1110 bits (574), Expect = 0.0
Identities = 627/648 (96%), Gaps = 8/648 (1%)
Strand = Plus / Minus
Query: 1 cttagaataaaagaaaaatgtaaattctgtgctcatctcagtagcttcaagattccccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 cttagaataaaagaaaaatgtaaattctgtgctcatctcagtagcttcaagattccccaa 781
Query: 61 gtccatggtgaccatagctacttccaaatgagacagtacagacagaaaatatgcttagtc 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 780 gtccatggtgaccatagctacttccaaatgggacagtacagacagaaaatatgcttagtc 721
Query: 121 tctaaaacgccaattaaacaactctagctcactacagtgctttagctcctgagtaactga 180
||||||| |||||||||||||||| || ||||||||||||||||||||| |||||||||
Sbjct: 720 tctaaaatgccaattaaacaactccagttcactacagtgctttagctcccaagtaactga 661
Query: 181 aaatttgtctaaaacagaacttcccacactactcacaaatattctcatttttacacattt 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aagtttgtctaaaacagaacttcccacactactcacaaatattctcatttttacacattt 601
Query: 241 ctattttacagttaatattttcttaatgtatattttaattgtattaaacatagtattttt 300
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 600 ctattttacagttaatattttct-----tatattttaattgtattaaacatagta-tttt 547
Query: 301 ttaatcctaatggaaaatttaaaatacaagcagatgtgggaaacactaattcctgtgtac 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 546 ttaatcctaatggaaaatttaaaatacaagcagatgtggaaaacactaattcctgtgtac 487
Query: 361 cataaccaagatttagtaattattataatgtctgacacccttttccatctctgtctctcc 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 486 cataaccaagatttagtaattattataatgtctgacacccttttccatctatgtctctcc 427
Query: 421 tctgatttctccatattacttaaagagaatctaaaagtgcgattcttgtcttagtagtgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 426 tctgatttctccatattacttaaagagaatctaaaagtgcgattcttgtctcagtagtat 367
Query: 481 ggtattatctgttaaacacaaactttcattaggcatattcacaaatacaatccttcaacc 540
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggtattatctgttaa--acaaactttcattaggcatattcacaaatacaatccttcaacc 309
Query: 541 attacagtcacagttaaaatttgaaaaatgtgatcttataattctttgaattcttacttt 600
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 308 attacagtcacagttaaaatttgaaaaatgtgatcttataattcttcggattcttacttt 249
Query: 601 cttcataaatataaggttttattaatttaaaataatgtaagatctgta 648
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cttcataaatataaggttttattaatttaaaataatgtaagatctgta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1040
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1030
Effective search space: 657140
Effective search space used: 657140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
