BAC Information

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BAC

Clone NameMSMg01-151M15
Chromosome4 (Build37)
Map Location 119,334,433 - 119,334,767
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b
Downstream geneHivep3, Edn2, Foxo6, Scmh1, Slfnl1, Ctps, EG667063
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151M15.T7 (MSMg01no151_m15.b1)MSMg01-151M15.TJ (MSMg01no151_m15.g1)
ACCAG353852AG353853
length754736
length of high quality
(start - end)
34 (93 - 126)335 (74 - 408)
definitionCHROMAT_FILE: MSMg01no151_m15.b1 PHD_FILE: MSMg01no151_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:42 2005CHROMAT_FILE: MSMg01no151_m15.g1 PHD_FILE: MSMg01no151_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCGAAGAGGAGCCGC
GGAATTCTCTTATTTGGCGATTGATGCGGGAGGGCCCAGTCCACTGGGGG
TGGGGCTACCCTAGGCAAGTGGTCTGCAGCTATAGAACAAGCACGAGCTG
GAGCTGGAGAGATGACTCAGTAACTCACACGCCCTCCCTGTTCTTCCAGA
GGACCCGAGTTCCAGTTCCCGCAACCACATCGGGTGGCTGGCAACTGCCT
TTAACTTTTCCTCCAGAGTAATGTAATTCCTCTGACCTCTGTCCCCCCCA
CACTCACATGCATGTATGGCCCACTTTCTTATGTATGCCTGCCCCACCCT
CCCATGCATGTATGCGCTCCCTTCCCACGCATTTATGCCCCACACCCCCC
TGTATGTATGGCACACCCCCCCCCTCTGCTGTTCACCCCCCCCTTCCCCT
ACCATCCTTGCCCCCCATCCCCACCCCTACTACCACAATGCCCATTTTAC
CCCCCTGTATCCCCTTTCCCCGCATCTCTCCTTTCCCTGTCCCGATTCCC
CTGCTCTCTTTTTTCTCCCCCGTCCCATTGTTGACCCCACCCCCTGCCCC
CCCCTCCAGTCTACCCCCCTCCCAACCCGTCCCCTGTCCCTTGCCCCTCC
CCCCTTTCCCTCCCCTTCCCCCCCTTTCCCCCCTTTTTTCCCCCCTCCTT
CCTCCCATTTCCTCCCCATCTTTTCCCCCCTCTCCCTATACCCTTCCCCT
CTTT
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTACAGCCTTCGACAACTCTTAGCTG
AATTGTCAACCTGTCAGTCTGCCCTACAGATTTCAGACAGACCTGTCTGT
CCTGATAGTTCCACGAGCCAGTTCCTCAAAGTAAATCTAGGGAGGAAACA
TAACAGTTAGATTGATGGTTGATTGACAGTCAGATAGAAGAACAGATCCT
GTGGATACTGTTTCCCTGGAGACCTCTGCCTAACAGTGCTGTTACAATAA
TTTGTGAAACCAAGGATGATATCTTGGATCTTGGGGAAGAGGTGAGGCCT
GGTTGGTTAGAAGCTAAGGATATTCTGAATGCCAATACAATCGAATCATC
AAATGCATTGACCCCACCAAGTGAAAAAGAGATGTCGAGAAAAACCCCTT
GAATTTTGACCTGCCCGCCCCCCCCTCCCCAGGCACATGGTAATTTCATC
AACTGTCATGGGAAAAGTTGTCGGGGTGGGCAGTCTCCGGGACTGAGCAC
ATGAAATTTCTTGAAGCTGCATGACACTACCAAAGTAAGTGACTAGAGAA
AAAGGATAGAGGTCCCAAGGACAAGTGCTGGTGGCCCTGTTGAGTTCTGA
CTTTCAGAGACCACCCAATCGACGATGTTTAGCTCCCGAAACGACAACAC
GTCCCCTCCCTGACCCCTTCACATCTGGAACGCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_m15.g1 MSMg01no151_m15.g1 CHROMAT_FILE:
MSMg01no151_m15.g1 PHD_FILE: MSMg01no151_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:42 2005
         (335 letters)



>mm_chr4_119334118_119334852
          Length = 735

 Score =  625 bits (323), Expect = 0.0
 Identities = 332/335 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actacagccttcgacaactcttagctgaattgtcaacctgtcagtctgccctacagattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 actacagccttcgacaactcttagctgaattgtcaacctgtcagtctgccctacagattt 591

                                                                       
Query: 61  cagacagacctgtctgtcctgatagttccacgagccagttcctcaaagtaaatctaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 cagacagacctgtctgtcctgatagttccacgagccagttcctcaaagtaaatctaggga 531

                                                                       
Query: 121 ggaaacataacagttagattgatggttgattgacagtcagatagaagaacagatcctgtg 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ggaaacataacagatagattgatggttgattgacagtcagatagaagaacagatcctgtg 471

                                                                       
Query: 181 gatactgtttccctggagacctctgcctaacagtgctgttacaataatttgtgaaaccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gatactgtttccctggagacctctgcctaacagtgctgttacaataatttgtgaaaccaa 411

                                                                       
Query: 241 ggatgatatcttggatcttggggaagaggtgaggcctggttggttagaagctaaggatat 300
           ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ggacgatagcttggatcttggggaagaggtgaggcctggttggttagaagctaaggatat 351

                                              
Query: 301 tctgaatgccaatacaatcgaatcatcaaatgcat 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 350 tctgaatgccaatacaatcgaatcatcaaatgcat 316


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)