Query= MSMg01no151_n13.b1 MSMg01no151_n13.b1 CHROMAT_FILE:
MSMg01no151_n13.b1 PHD_FILE: MSMg01no151_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:46 2005
(625 letters)
>mm_chr4_85684860_85685884
Length = 1025
Score = 1112 bits (575), Expect = 0.0
Identities = 606/621 (97%), Gaps = 8/621 (1%)
Strand = Plus / Plus
Query: 5 gaattcttcagcttgctcccattctgtcttagctcatgcacaatcacacgtaggcatagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcagcttgctcccattctgtcttagctcatgcacaatcacacgtaggcatagc 264
Query: 65 tgacatccactctcctccagggacagaagagaggatgtgcctgtgtctcaacaatcaaat 124
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 tgacatccactctcctccagggacagaagagaggatgtgtctgtgtctcaacaatcaaat 324
Query: 125 ctattccatgcatgaggctggggtccatgatcttggcttctggggttctaaatcactagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctattccatgcatgaggctggggtccatgatcttggcttctggggttctaaatcactagg 384
Query: 185 tgcatgcagtgctgcctctcacacctttgaagaataaactgcccgctcacatcctaccca 244
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacatgcagtgctgcctctcatgcctttgaagaataaactgcccgctcacatcctaccca 444
Query: 245 ttttctgctgttgtgaaagttgacctcaggattttaaagaagagcttttaaagcactttg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttttctgctgttgtgaaagttgacctcaggattttaaagaagagcttttaaagcactttg 504
Query: 305 gaaaactcttttttttattgaaatcaatagtttgaaaagatttgtgtctgtgttcatagg 364
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 gaaaactcttttttttattgaaatcaacagtttgaaaagatttgtgtctgtgttcatagg 564
Query: 365 aataaataacacaacctaatggtgacttagtgtatatattccaacaataaaacataaaca 424
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aataaataatacaacctaatggtgacttagtgtatatattccaacaataaaacataaaca 624
Query: 425 cacacacacacacacacacactcaagggtttagccaacaattacatccttattatgtggg 484
||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 625 cacacacacacac--------tcaagggtttacccaacaattacatccttattatgtggg 676
Query: 485 acatacctgtatttcattaactatttttctcttgtttttgatgcttgttataaaatgttg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 acatacctgtatttcattaactatttttctcttgtttttgatgcttgttataaaatgttg 736
Query: 545 attctctgatttattaatggattaactcatggttaaatggcaacttactttccctatgta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 attctctgatttattaatggattaactcatggttaaatggcaacttactttccctatgta 796
Query: 605 ggtatgaatataatatgtgag 625
|||||||||||||||||||||
Sbjct: 797 ggtatgaatataatatgtgag 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no151_n13.g1 MSMg01no151_n13.g1 CHROMAT_FILE:
MSMg01no151_n13.g1 PHD_FILE: MSMg01no151_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:46 2005
(644 letters)
>mm_chr4_85833550_85834597
Length = 1048
Score = 1197 bits (619), Expect = 0.0
Identities = 639/651 (98%), Gaps = 10/651 (1%)
Strand = Plus / Minus
Query: 1 ccacagaaaatggcttttaagctccacccttacagactatatccagttaaagtagctcag 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 ccacagaaaatggcatttaagctccacccttacagactatatccagttaaagtagctcag 789
Query: 61 tgtaatagccagcaccaagctgggttagctcatagagaaattacttataagaaggtcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 tgtaatagccagcaccaagctgggttagctcatagagaaattacttataagaaggtcaat 729
Query: 121 ggaatattttagaataaagtttaaaaagaaaatccccagcattgctgtggagtggcaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ggaatattttagaataaagtttaaaaagaaaatccccagcattgctgtggagtggcaaat 669
Query: 181 catttcttctaaaagtcactcaagtcatagaggaacgctgagagttctggaaactctcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 catttcttctaaaagtcactcaagtcatagaggaacgctgagagttctggaaactctcaa 609
Query: 241 ctttccaactccagaccactgatctagtgttaattcaggaaccacattaaaatatatcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ctttccaactccagaccactgatctagtgttaattcaggaaccacattaaaatatatcca 549
Query: 301 tgtgagcaataatcactaagtctccttttcaatacaaaataaagctgcctcaaatatatt 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 548 tgtgagcaataatcactaagtctccttttcaatacaaaataaagctgtctcaaatatatt 489
Query: 361 cttttaagtcataagatcctgggaaagtcaaattttaaggggctgggacaagagctctgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cttttaagtcataagatcctgggaaagtcaaattttaaggggctgggacaagagctctgc 429
Query: 421 ttttctctaccagagtctcttcagattgtgacctagggatgttgacagaaaacagataat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttttctctaccagagtctcttcagattgtgacctagggatgttgacagaaaacagataat 369
Query: 481 ctgcagttcatttgtgtttgagaatgttcaacatgaatgtattttagtgggaaagagtca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ctgcagttcatttgtgtttgagaatgttcaacatgaatgtattttagtgggaaagagtca 309
Query: 541 ccgaatctaaacacggtaaagatgagttaaaagttactttg-------cccttttttttt 593
||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 308 ccgaatctaaacacggtaaagatgagttaaaagttactttgcccccccccc---tttttt 252
Query: 594 tttaaaggaaagtagcatccctgaagctgtgaatttgatttgtatattaat 644
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tttaaaggaaagtagcatccctgaagctgtgaatttgatttgtatattaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1048
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1038
Effective search space: 658092
Effective search space used: 658092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
