Query= MSMg01no152_b15.b1 MSMg01no152_b15.b1 CHROMAT_FILE:
MSMg01no152_b15.b1 PHD_FILE: MSMg01no152_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:07 2005
(502 letters)
>mm_chr4_58066839_58067745
Length = 907
Score = 762 bits (394), Expect = 0.0
Identities = 470/506 (92%), Gaps = 21/506 (4%)
Strand = Plus / Plus
Query: 6 gaattcaccatatcttcctttcaaaatgttttcattaatttgtattttctcttaatgcct 65
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaccatatcttcatttcaaaatgttttcattaatttgtattttctcttaatgcct 265
Query: 66 gagtttaatcagttgaagaatctaataaaagcagactctaagacaggtggttataac--- 122
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gagtttaatcagtggaggaatctaataaaagcagactctaagacaggtggttataacata 325
Query: 123 --ataagttataagtctctcaatatttgatgagtgccaacaacatggtaaattctgttga 180
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 326 ttataagttttaagtctctcaatatttgatgagtgccaacagcatggtaaattctgttga 385
Query: 181 actccaaatattgagaacttcaaagtctctcatcaaatattgagagacttttgatataaa 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 actccaaatattgagaactccaaagtctctcatcaaatattgagagacttttgatataaa 445
Query: 241 attgggtttgatggacacaga----tggccttccctggaccagtctcagttattggtatt 296
|| || | || | ||| || |||||||||||| || |||||||||||
Sbjct: 446 at--------at---cccataaaattgg-gtttcctggaccagtcccatttattggtatt 493
Query: 297 tccccttcaagcagagataagtgtgaagctattgtgaagcggaaagtgattaaaaccagc 356
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 494 tccccttcaagcagagataagtgtgaagctattgtgaagtggaatgtgattaaaaccagc 553
Query: 357 ccctaaagtcaacacacacgtttgcagaggggagtcaggtgactccaggttccatttgca 416
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 554 ccctaaagtcaacacacacgtttgcagaggggagtcaggtgattccaggttccatttgca 613
Query: 417 gtgcagtgtgcctcgggggacccttccagggtgtagcctctgtgacaggaaaacagaagg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gtgcagtgtgcctcgggggacccttccagggtgtagcctctgtgacaggaaaacagaagg 673
Query: 477 ctgggtccagatgtggtgttttccaa 502
||||||||||||||||||||||||||
Sbjct: 674 ctgggtccagatgtggtgttttccaa 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 907
Length adjustment: 10
Effective length of query: 492
Effective length of database: 897
Effective search space: 441324
Effective search space used: 441324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no152_b15.g1 MSMg01no152_b15.g1 CHROMAT_FILE:
MSMg01no152_b15.g1 PHD_FILE: MSMg01no152_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:07 2005
(420 letters)
>mm_chr4_58191100_58191918
Length = 819
Score = 766 bits (396), Expect = 0.0
Identities = 414/420 (98%), Gaps = 1/420 (0%)
Strand = Plus / Minus
Query: 1 atcggtggtctcaacgcaccacgagcgtataaggatgtttaactgtatggttctcagtta 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atcggtggtctcaacgcaccgcgagcgtataaggatgtttaactgtatggttctcagtta 560
Query: 61 ggtgaacttgcctattgtaatatgaacctggagaaaagaatccaggcagaatgtgaggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ggtgaacttgcctattgtaatatgaacctggagaaaagaatccaggcagaatgtgaggtg 500
Query: 121 ttgacagaagatttagatatgtgccaaattgagccatgatcctggcaggttctcaagtta 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttgacagaagatttagatatgtgccaaattgagccatgatcctggcaggttctcaagtt- 441
Query: 181 aaaaaaaaaaaatcaatgtaaggcaggaatgataacaatatattcaaagaacccgtgagg 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 440 aaaaaaaaaaaatcaacgtaaggcaggaatgataacaatatattcaaagaacctgtgagg 381
Query: 241 ctcaaaaaagccaggttatccctggtggaattccaaaagaagagtttccagtgggctaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctcaaaaaagccaggttatccctggtggaattccaaaagaagagtttccagtgggctaca 321
Query: 301 agtgagcctattgctgtggctttagtaaaaaggattcgcttctctgagggtggggttcct 360
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 320 agtgagcctattgctgtggctttagtaaaaaggattagcttctctgaggatggggttcct 261
Query: 361 agctaaccttactagaattaagactcagaaaaatggggtggactggggagtgagtttggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agctaaccttactagaattaagactcagaaaaatggggtggactggggagtgagtttggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 819
Length adjustment: 9
Effective length of query: 411
Effective length of database: 810
Effective search space: 332910
Effective search space used: 332910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
